Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 AC138932.5-201ENST00000617759 563 ntBASIC2.94□□□□□ -1.94
USH1CQ9Y6N9 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC2.94□□□□□ -1.94
USH1CQ9Y6N9 AL035425.3-201ENST00000564206 4996 ntBASIC2.94□□□□□ -1.94
USH1CQ9Y6N9 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.94□□□□□ -1.94
USH1CQ9Y6N9 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
USH1CQ9Y6N9 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.93□□□□□ -1.94
USH1CQ9Y6N9 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
USH1CQ9Y6N9 ZNF33BP1-201ENST00000452497 1834 ntBASIC2.93□□□□□ -1.94
USH1CQ9Y6N9 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
USH1CQ9Y6N9 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.93□□□□□ -1.94
USH1CQ9Y6N9 RNU1-35P-201ENST00000362782 153 ntBASIC2.93□□□□□ -1.94
USH1CQ9Y6N9 OR6C4-201ENST00000394256 1046 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
USH1CQ9Y6N9 AL121972.1-201ENST00000402023 252 ntBASIC2.93□□□□□ -1.94
USH1CQ9Y6N9 MTND4P13-201ENST00000402078 1023 ntBASIC2.93□□□□□ -1.94
USH1CQ9Y6N9 AL354719.1-201ENST00000406535 843 ntBASIC2.93□□□□□ -1.94
USH1CQ9Y6N9 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC2.93□□□□□ -1.94
USH1CQ9Y6N9 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC2.93□□□□□ -1.94
USH1CQ9Y6N9 AC244453.4-201ENST00000419150 388 ntBASIC2.93□□□□□ -1.94
USH1CQ9Y6N9 AC104332.2-201ENST00000429959 156 ntBASIC2.93□□□□□ -1.94
USH1CQ9Y6N9 TPTE2P1-204ENST00000435256 593 ntBASIC2.93□□□□□ -1.94
USH1CQ9Y6N9 AC068135.1-201ENST00000446164 246 ntBASIC2.93□□□□□ -1.94
USH1CQ9Y6N9 AC016696.1-201ENST00000446949 318 ntBASIC2.93□□□□□ -1.94
USH1CQ9Y6N9 PRDX3P3-201ENST00000447765 522 ntBASIC2.93□□□□□ -1.94
USH1CQ9Y6N9 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC2.93□□□□□ -1.94
USH1CQ9Y6N9 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC2.93□□□□□ -1.94
USH1CQ9Y6N9 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC2.93□□□□□ -1.94
USH1CQ9Y6N9 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC2.93□□□□□ -1.94
USH1CQ9Y6N9 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC2.93□□□□□ -1.94
USH1CQ9Y6N9 AC107954.1-201ENST00000565906 727 ntBASIC2.93□□□□□ -1.94
USH1CQ9Y6N9 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC2.93□□□□□ -1.94
USH1CQ9Y6N9 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC2.93□□□□□ -1.94
USH1CQ9Y6N9 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC2.93□□□□□ -1.94
USH1CQ9Y6N9 AP000787.2-201ENST00000604432 568 ntBASIC2.93□□□□□ -1.94
USH1CQ9Y6N9 AL159169.3-201ENST00000608871 561 ntBASIC2.93□□□□□ -1.94
USH1CQ9Y6N9 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC2.93□□□□□ -1.94
USH1CQ9Y6N9 AL590282.1-201ENST00000610379 1136 ntBASIC2.93□□□□□ -1.94
USH1CQ9Y6N9 AC105227.2-201ENST00000615075 605 ntBASIC2.93□□□□□ -1.94
USH1CQ9Y6N9 AC116096.1-201ENST00000566804 2314 ntBASIC2.93□□□□□ -1.94
USH1CQ9Y6N9 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
USH1CQ9Y6N9 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 AC004925.1-201ENST00000624256 2706 ntBASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 AL359893.1-201ENST00000447628 1580 ntBASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 DEFB109C-201ENST00000382575 264 ntBASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 DEFB109B-201ENST00000382656 264 ntBASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 RNU6-761P-201ENST00000384148 107 ntBASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 SNORA7.4-201ENST00000384249 137 ntBASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 MIR181A2-201ENST00000384863 110 ntBASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 MIR490-201ENST00000384865 128 ntBASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 MIR183-201ENST00000384958 110 ntBASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 U3.42-201ENST00000408746 214 ntBASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 RPL23AP83-201ENST00000434984 473 ntBASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 RPL36AP6-201ENST00000435770 321 ntBASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 AC005019.1-201ENST00000436455 431 ntBASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 UBE2V1P5-201ENST00000440070 405 ntBASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 XKRY2-201ENST00000442362 1093 ntBASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 AC068724.1-201ENST00000487100 792 ntBASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 ENSA-210ENST00000503241 574 ntTSL 3 BASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 AC110794.1-201ENST00000505816 425 ntBASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 AC008885.2-201ENST00000509506 930 ntBASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 RNU6-56P-201ENST00000516986 93 ntBASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 AC008687.2-201ENST00000597865 520 ntBASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 ELOCP35-201ENST00000604289 336 ntBASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 AC007179.3-201ENST00000604976 235 ntBASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 AL390240.1-201ENST00000612950 384 ntBASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 AC002076.2-201ENST00000617362 122 ntBASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 AC018926.3-201ENST00000618841 406 ntBASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 AC099506.2-201ENST00000623074 221 ntBASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 ZNF90P1-201ENST00000480493 1951 ntBASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
USH1CQ9Y6N9 SAGE4P-201ENST00000442271 3381 ntBASIC2.91□□□□□ -1.94
USH1CQ9Y6N9 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC2.91□□□□□ -1.94
USH1CQ9Y6N9 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.91□□□□□ -1.94
USH1CQ9Y6N9 AC073055.1-201ENST00000456901 1621 ntBASIC2.91□□□□□ -1.94
USH1CQ9Y6N9 RNU6-50P-201ENST00000362356 103 ntBASIC2.91□□□□□ -1.94
USH1CQ9Y6N9 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
USH1CQ9Y6N9 RNU1-101P-201ENST00000391171 127 ntBASIC2.91□□□□□ -1.94
USH1CQ9Y6N9 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms