Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 HSPE1P28-201ENST00000443139 211 ntBASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 AC091685.2-201ENST00000454924 864 ntBASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 RN7SL443P-201ENST00000464331 290 ntBASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 MTCO2P29-201ENST00000465212 189 ntBASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 RN7SL244P-201ENST00000493405 297 ntBASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 AC005912.1-201ENST00000495392 255 ntBASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 AC010350.1-201ENST00000504908 231 ntBASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 HSPD1P15-201ENST00000505573 1122 ntBASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 AC021146.1-201ENST00000511202 716 ntBASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 Y_RNA.665-201ENST00000516177 98 ntBASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 ZNF705CP-201ENST00000530515 889 ntBASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 BNIP3P6-201ENST00000549284 499 ntBASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 MIR3934-201ENST00000579806 107 ntBASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 AL353997.4-201ENST00000586196 166 ntBASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 AL158196.1-201ENST00000616786 434 ntBASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 AC009318.4-201ENST00000620496 486 ntBASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 AL359757.2-201ENST00000624309 274 ntBASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 FTX-210ENST00000603037 8347 ntTSL 5 BASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 SMG1P7-201ENST00000565246 2704 ntBASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 Z95331.1-201ENST00000623075 23112 ntBASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 INTS6P1-201ENST00000504674 2530 ntBASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 AC134882.1-201ENST00000603738 1676 ntBASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 RNU6-907P-201ENST00000390924 102 ntBASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 DSTNP4-201ENST00000399472 474 ntBASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 AL133270.1-201ENST00000402635 279 ntBASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 AL133384.1-201ENST00000412744 351 ntBASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 AC079809.1-201ENST00000415468 276 ntBASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 AP000936.3-201ENST00000438127 255 ntBASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 AC079781.2-201ENST00000446424 169 ntBASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 AL133244.1-201ENST00000456007 258 ntBASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 AC083982.1-201ENST00000485679 344 ntBASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 AK3P4-201ENST00000504283 583 ntBASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 AC004062.1-201ENST00000509926 645 ntBASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 AC105417.1-201ENST00000514691 285 ntBASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 RN7SKP96-201ENST00000516948 297 ntBASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 AC018552.1-201ENST00000562099 811 ntBASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 MIR3146-201ENST00000580367 79 ntBASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 AC105254.2-201ENST00000603636 436 ntBASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 AL049539.1-201ENST00000611964 459 ntBASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 7SK.10-201ENST00000621414 298 ntBASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 IRF5P1-201ENST00000504852 2164 ntBASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 AL606537.1-201ENST00000607258 2011 ntBASIC6.37□□□□□ -1.39
CHMP3Q9Y3E7 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC6.36□□□□□ -1.39
CHMP3Q9Y3E7 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC6.36□□□□□ -1.39
CHMP3Q9Y3E7 AC092447.10-201ENST00000620607 1652 ntBASIC6.36□□□□□ -1.39
CHMP3Q9Y3E7 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC6.36□□□□□ -1.39
CHMP3Q9Y3E7 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC6.36□□□□□ -1.39
CHMP3Q9Y3E7 MTCO1P12-201ENST00000414273 1543 ntBASIC6.36□□□□□ -1.39
CHMP3Q9Y3E7 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC6.36□□□□□ -1.39
CHMP3Q9Y3E7 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
CHMP3Q9Y3E7 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC6.36□□□□□ -1.39
CHMP3Q9Y3E7 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC6.36□□□□□ -1.39
CHMP3Q9Y3E7 RNA5SP428-201ENST00000365129 132 ntBASIC6.36□□□□□ -1.39
CHMP3Q9Y3E7 OR1L6-202ENST00000373684 1044 ntBASIC6.36□□□□□ -1.39
CHMP3Q9Y3E7 MIR514A2-201ENST00000385131 88 ntBASIC6.36□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 110.2 ms