Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 RNU6-1214P-201ENST00000363650 109 ntBASIC3.67□□□□□ -1.82
CCDC3Q9BQI4 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC3Q9BQI4 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC3Q9BQI4 MIR153-1-201ENST00000384914 90 ntBASIC3.67□□□□□ -1.82
CCDC3Q9BQI4 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC3.67□□□□□ -1.82
CCDC3Q9BQI4 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC3.67□□□□□ -1.82
CCDC3Q9BQI4 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.67□□□□□ -1.82
CCDC3Q9BQI4 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC3.67□□□□□ -1.82
CCDC3Q9BQI4 AC010099.3-201ENST00000423896 409 ntBASIC3.67□□□□□ -1.82
CCDC3Q9BQI4 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC3.67□□□□□ -1.82
CCDC3Q9BQI4 CYCSP43-201ENST00000438233 310 ntBASIC3.67□□□□□ -1.82
CCDC3Q9BQI4 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC3.67□□□□□ -1.82
CCDC3Q9BQI4 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.67□□□□□ -1.82
CCDC3Q9BQI4 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC3.67□□□□□ -1.82
CCDC3Q9BQI4 PRDX3P3-201ENST00000447765 522 ntBASIC3.67□□□□□ -1.82
CCDC3Q9BQI4 RPS17P13-201ENST00000448974 407 ntBASIC3.67□□□□□ -1.82
CCDC3Q9BQI4 NECAP1P2-201ENST00000455668 727 ntBASIC3.67□□□□□ -1.82
CCDC3Q9BQI4 SNRPGP5-201ENST00000456003 220 ntBASIC3.67□□□□□ -1.82
CCDC3Q9BQI4 AC010587.2-201ENST00000511727 448 ntBASIC3.67□□□□□ -1.82
CCDC3Q9BQI4 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC3.67□□□□□ -1.82
CCDC3Q9BQI4 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC3.67□□□□□ -1.82
CCDC3Q9BQI4 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.67□□□□□ -1.82
CCDC3Q9BQI4 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC3.67□□□□□ -1.82
CCDC3Q9BQI4 ERP27-202ENST00000540097 993 ntTSL 2 BASIC3.67□□□□□ -1.82
CCDC3Q9BQI4 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC3.67□□□□□ -1.82
CCDC3Q9BQI4 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.67□□□□□ -1.82
CCDC3Q9BQI4 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC3.67□□□□□ -1.82
CCDC3Q9BQI4 AC002400.1-201ENST00000569310 726 ntBASIC3.67□□□□□ -1.82
CCDC3Q9BQI4 AC005412.1-201ENST00000580812 1049 ntBASIC3.67□□□□□ -1.82
CCDC3Q9BQI4 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC3.67□□□□□ -1.82
CCDC3Q9BQI4 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC3.67□□□□□ -1.82
CCDC3Q9BQI4 AC092354.2-201ENST00000607786 514 ntBASIC3.67□□□□□ -1.82
CCDC3Q9BQI4 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC3.67□□□□□ -1.82
CCDC3Q9BQI4 Z99129.2-201ENST00000619967 314 ntBASIC3.67□□□□□ -1.82
CCDC3Q9BQI4 AP002791.1-201ENST00000623291 381 ntBASIC3.67□□□□□ -1.82
CCDC3Q9BQI4 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
CCDC3Q9BQI4 AL031985.3-201ENST00000565390 2449 ntBASIC3.67□□□□□ -1.82
CCDC3Q9BQI4 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
CCDC3Q9BQI4 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
CCDC3Q9BQI4 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC3Q9BQI4 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
CCDC3Q9BQI4 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.67□□□□□ -1.82
CCDC3Q9BQI4 UBE3AP2-201ENST00000429033 2259 ntBASIC3.67□□□□□ -1.82
CCDC3Q9BQI4 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC3.67□□□□□ -1.82
CCDC3Q9BQI4 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 SNRPEP3-201ENST00000338402 276 ntBASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 RNA5SP72-201ENST00000364442 117 ntBASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 RNA5SP51-201ENST00000364750 119 ntBASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 MIR183-201ENST00000384958 110 ntBASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 RPL17P50-201ENST00000396131 546 ntBASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 TAF9BP1-201ENST00000396646 746 ntBASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 RSL24D1P4-201ENST00000400938 484 ntBASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 AL049545.1-201ENST00000401856 572 ntBASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 TANK-206ENST00000406287 875 ntTSL 5 BASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 AC006960.1-201ENST00000419980 153 ntBASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 FGF7P5-201ENST00000441829 291 ntBASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 MTND2P19-201ENST00000449129 1012 ntBASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 PPIAP3-201ENST00000450588 505 ntBASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 RPL18AP17-201ENST00000455326 198 ntBASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 RN7SL293P-201ENST00000481765 281 ntBASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 AC091951.3-201ENST00000504093 246 ntBASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 IGKV2D-23-201ENST00000518179 286 ntBASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 MTATP6P15-201ENST00000527233 835 ntBASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 AC023538.1-201ENST00000534576 736 ntBASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 AC092851.1-201ENST00000535964 478 ntBASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 HSPE1P3-201ENST00000559254 309 ntBASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 AC009094.1-201ENST00000564443 426 ntBASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 MIR3922-201ENST00000585192 84 ntBASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 AC096577.2-201ENST00000611455 153 ntBASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 AL355493.4-201ENST00000618530 292 ntBASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 AP000484.1-201ENST00000620067 1252 ntBASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 MIR4727-201ENST00000622232 55 ntBASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 AC093908.1-201ENST00000623125 8092 ntBASIC3.66□□□□□ -1.82
CCDC3Q9BQI4 AC097520.1-201ENST00000624435 385 ntBASIC3.66□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms