Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
HDDC3Q8N4P3 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.64□□□□□ -1.83
HDDC3Q8N4P3 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.64□□□□□ -1.83
HDDC3Q8N4P3 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.64□□□□□ -1.83
HDDC3Q8N4P3 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC3.64□□□□□ -1.83
HDDC3Q8N4P3 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
HDDC3Q8N4P3 RNU6-492P-201ENST00000363035 104 ntBASIC3.64□□□□□ -1.83
HDDC3Q8N4P3 SNORA51.6-201ENST00000384151 125 ntBASIC3.64□□□□□ -1.83
HDDC3Q8N4P3 MIR128-1-201ENST00000384921 82 ntBASIC3.64□□□□□ -1.83
HDDC3Q8N4P3 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC3.64□□□□□ -1.83
HDDC3Q8N4P3 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC3.64□□□□□ -1.83
HDDC3Q8N4P3 AC092634.6-201ENST00000418558 192 ntBASIC3.64□□□□□ -1.83
HDDC3Q8N4P3 CYCSP4-201ENST00000429682 331 ntBASIC3.64□□□□□ -1.83
HDDC3Q8N4P3 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.64□□□□□ -1.83
HDDC3Q8N4P3 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.64□□□□□ -1.83
HDDC3Q8N4P3 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
HDDC3Q8N4P3 SSXP4-201ENST00000451349 245 ntBASIC3.64□□□□□ -1.83
HDDC3Q8N4P3 AL049830.2-201ENST00000480072 201 ntBASIC3.64□□□□□ -1.83
HDDC3Q8N4P3 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC3.64□□□□□ -1.83
HDDC3Q8N4P3 AC010342.1-201ENST00000514047 877 ntBASIC3.64□□□□□ -1.83
HDDC3Q8N4P3 SNORA70.18-201ENST00000516696 98 ntBASIC3.64□□□□□ -1.83
HDDC3Q8N4P3 SNORA48.10-201ENST00000516965 160 ntBASIC3.64□□□□□ -1.83
HDDC3Q8N4P3 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC3.64□□□□□ -1.83
HDDC3Q8N4P3 NARSP2-201ENST00000518524 679 ntBASIC3.64□□□□□ -1.83
HDDC3Q8N4P3 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC3.64□□□□□ -1.83
HDDC3Q8N4P3 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC3.64□□□□□ -1.83
HDDC3Q8N4P3 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC3.64□□□□□ -1.83
HDDC3Q8N4P3 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.64□□□□□ -1.83
HDDC3Q8N4P3 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC3.64□□□□□ -1.83
HDDC3Q8N4P3 AC055876.5-201ENST00000605667 259 ntBASIC3.64□□□□□ -1.83
HDDC3Q8N4P3 BRDTP1-201ENST00000605735 677 ntBASIC3.64□□□□□ -1.83
HDDC3Q8N4P3 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC3.64□□□□□ -1.83
HDDC3Q8N4P3 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC3.64□□□□□ -1.83
HDDC3Q8N4P3 MIR486-1-201ENST00000612171 68 ntBASIC3.64□□□□□ -1.83
HDDC3Q8N4P3 AC069209.1-201ENST00000619282 651 ntBASIC3.64□□□□□ -1.83
HDDC3Q8N4P3 AC091905.1-201ENST00000624400 311 ntBASIC3.64□□□□□ -1.83
HDDC3Q8N4P3 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
HDDC3Q8N4P3 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
HDDC3Q8N4P3 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.64□□□□□ -1.83
HDDC3Q8N4P3 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
HDDC3Q8N4P3 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
HDDC3Q8N4P3 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
HDDC3Q8N4P3 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
HDDC3Q8N4P3 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
HDDC3Q8N4P3 AL138878.1-201ENST00000405131 347 ntBASIC3.63□□□□□ -1.83
HDDC3Q8N4P3 STAT4-203ENST00000409995 709 ntTSL 5 BASIC3.63□□□□□ -1.83
HDDC3Q8N4P3 RNU2-28P-201ENST00000410457 189 ntBASIC3.63□□□□□ -1.83
HDDC3Q8N4P3 RNU4-65P-201ENST00000410473 140 ntBASIC3.63□□□□□ -1.83
HDDC3Q8N4P3 BTF3P8-201ENST00000414577 526 ntBASIC3.63□□□□□ -1.83
HDDC3Q8N4P3 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.63□□□□□ -1.83
HDDC3Q8N4P3 AC005019.1-201ENST00000436455 431 ntBASIC3.63□□□□□ -1.83
HDDC3Q8N4P3 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC3.63□□□□□ -1.83
HDDC3Q8N4P3 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC3.63□□□□□ -1.83
HDDC3Q8N4P3 MRPL42P4-201ENST00000453267 443 ntBASIC3.63□□□□□ -1.83
HDDC3Q8N4P3 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC3.63□□□□□ -1.83
HDDC3Q8N4P3 AC244505.3-201ENST00000454598 187 ntBASIC3.63□□□□□ -1.83
HDDC3Q8N4P3 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.63□□□□□ -1.83
HDDC3Q8N4P3 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC3.63□□□□□ -1.83
HDDC3Q8N4P3 AC099563.1-201ENST00000456086 418 ntBASIC3.63□□□□□ -1.83
HDDC3Q8N4P3 AC012181.1-201ENST00000479895 423 ntBASIC3.63□□□□□ -1.83
HDDC3Q8N4P3 AC013828.1-201ENST00000481845 158 ntBASIC3.63□□□□□ -1.83
HDDC3Q8N4P3 AC092902.1-201ENST00000486999 259 ntBASIC3.63□□□□□ -1.83
HDDC3Q8N4P3 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
HDDC3Q8N4P3 BTF3L4P4-201ENST00000506381 449 ntBASIC3.63□□□□□ -1.83
HDDC3Q8N4P3 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
HDDC3Q8N4P3 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC3.63□□□□□ -1.83
HDDC3Q8N4P3 AC090136.1-201ENST00000520009 240 ntBASIC3.63□□□□□ -1.83
HDDC3Q8N4P3 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC3.63□□□□□ -1.83
HDDC3Q8N4P3 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC3.63□□□□□ -1.83
HDDC3Q8N4P3 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.63□□□□□ -1.83
HDDC3Q8N4P3 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC3.63□□□□□ -1.83
HDDC3Q8N4P3 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC3.63□□□□□ -1.83
HDDC3Q8N4P3 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC3.63□□□□□ -1.83
HDDC3Q8N4P3 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC3.63□□□□□ -1.83
HDDC3Q8N4P3 AC099785.1-201ENST00000605697 437 ntBASIC3.63□□□□□ -1.83
HDDC3Q8N4P3 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC3.63□□□□□ -1.83
HDDC3Q8N4P3 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC3.63□□□□□ -1.83
HDDC3Q8N4P3 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
HDDC3Q8N4P3 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.63□□□□□ -1.83
HDDC3Q8N4P3 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
HDDC3Q8N4P3 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
HDDC3Q8N4P3 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.62□□□□□ -1.83
HDDC3Q8N4P3 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC3.62□□□□□ -1.83
HDDC3Q8N4P3 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.62□□□□□ -1.83
HDDC3Q8N4P3 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
HDDC3Q8N4P3 UBE2Q2P1-202ENST00000354771 883 ntBASIC3.62□□□□□ -1.83
HDDC3Q8N4P3 RNU1-33P-201ENST00000364249 162 ntBASIC3.62□□□□□ -1.83
HDDC3Q8N4P3 RNU6-1074P-201ENST00000383995 104 ntBASIC3.62□□□□□ -1.83
HDDC3Q8N4P3 MIR217-201ENST00000384817 110 ntBASIC3.62□□□□□ -1.83
HDDC3Q8N4P3 MOB4-205ENST00000409916 829 ntTSL 3 BASIC3.62□□□□□ -1.83
HDDC3Q8N4P3 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC3.62□□□□□ -1.83
HDDC3Q8N4P3 AC027644.1-201ENST00000419595 298 ntBASIC3.62□□□□□ -1.83
HDDC3Q8N4P3 OR1AA1P-201ENST00000419597 916 ntBASIC3.62□□□□□ -1.83
HDDC3Q8N4P3 RPL21P109-201ENST00000422213 475 ntBASIC3.62□□□□□ -1.83
HDDC3Q8N4P3 AC013262.1-201ENST00000426710 252 ntBASIC3.62□□□□□ -1.83
HDDC3Q8N4P3 Z93242.1-201ENST00000427102 353 ntBASIC3.62□□□□□ -1.83
HDDC3Q8N4P3 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC3.62□□□□□ -1.83
HDDC3Q8N4P3 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC3.62□□□□□ -1.83
HDDC3Q8N4P3 AL591503.2-201ENST00000442314 1005 ntBASIC3.62□□□□□ -1.83
HDDC3Q8N4P3 MTND2P19-201ENST00000449129 1012 ntBASIC3.62□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 82.4 ms