Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 CYCSP41-201ENST00000616920 296 ntBASIC3.11□□□□□ -1.91
SKA3Q8IX90 AC010975.3-201ENST00000618727 978 ntBASIC3.11□□□□□ -1.91
SKA3Q8IX90 U4.6-201ENST00000621618 127 ntBASIC3.11□□□□□ -1.91
SKA3Q8IX90 AC048347.1-201ENST00000624621 427 ntBASIC3.11□□□□□ -1.91
SKA3Q8IX90 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC3.11□□□□□ -1.91
SKA3Q8IX90 MTND5P3-201ENST00000438536 1800 ntBASIC3.11□□□□□ -1.91
SKA3Q8IX90 AL359893.1-201ENST00000447628 1580 ntBASIC3.11□□□□□ -1.91
SKA3Q8IX90 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
SKA3Q8IX90 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC3.1□□□□□ -1.91
SKA3Q8IX90 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC3.1□□□□□ -1.91
SKA3Q8IX90 RNU6-1066P-201ENST00000363573 105 ntBASIC3.1□□□□□ -1.91
SKA3Q8IX90 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
SKA3Q8IX90 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
SKA3Q8IX90 PTMAP2-201ENST00000397627 327 ntBASIC3.1□□□□□ -1.91
SKA3Q8IX90 AL583834.1-201ENST00000406943 343 ntBASIC3.1□□□□□ -1.91
SKA3Q8IX90 MIR1250-201ENST00000408098 113 ntBASIC3.1□□□□□ -1.91
SKA3Q8IX90 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC3.1□□□□□ -1.91
SKA3Q8IX90 OR4K6P-201ENST00000416478 897 ntBASIC3.1□□□□□ -1.91
SKA3Q8IX90 KRR1P1-201ENST00000419430 803 ntBASIC3.1□□□□□ -1.91
SKA3Q8IX90 MTCO3P1-205ENST00000422088 832 ntBASIC3.1□□□□□ -1.91
SKA3Q8IX90 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC3.1□□□□□ -1.91
SKA3Q8IX90 RPF2P1-201ENST00000424137 906 ntBASIC3.1□□□□□ -1.91
SKA3Q8IX90 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC3.1□□□□□ -1.91
SKA3Q8IX90 AL035410.1-201ENST00000427409 427 ntBASIC3.1□□□□□ -1.91
SKA3Q8IX90 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC3.1□□□□□ -1.91
SKA3Q8IX90 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC3.1□□□□□ -1.91
SKA3Q8IX90 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC3.1□□□□□ -1.91
SKA3Q8IX90 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
SKA3Q8IX90 AC112492.1-201ENST00000449607 712 ntBASIC3.1□□□□□ -1.91
SKA3Q8IX90 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
SKA3Q8IX90 AC073387.1-201ENST00000453261 709 ntBASIC3.1□□□□□ -1.91
SKA3Q8IX90 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC3.1□□□□□ -1.91
SKA3Q8IX90 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC3.1□□□□□ -1.91
SKA3Q8IX90 WDR78-207ENST00000488333 613 ntTSL 3 BASIC3.1□□□□□ -1.91
SKA3Q8IX90 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC3.1□□□□□ -1.91
SKA3Q8IX90 RPL21P131-201ENST00000497298 483 ntBASIC3.1□□□□□ -1.91
SKA3Q8IX90 AC078918.1-201ENST00000498515 228 ntBASIC3.1□□□□□ -1.91
SKA3Q8IX90 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC3.1□□□□□ -1.91
SKA3Q8IX90 MTCYBP37-201ENST00000510642 1133 ntBASIC3.1□□□□□ -1.91
SKA3Q8IX90 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC3.1□□□□□ -1.91
SKA3Q8IX90 AC023141.12-201ENST00000512399 199 ntBASIC3.1□□□□□ -1.91
SKA3Q8IX90 RNU2-27P-201ENST00000516185 142 ntBASIC3.1□□□□□ -1.91
SKA3Q8IX90 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC3.1□□□□□ -1.91
SKA3Q8IX90 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC3.1□□□□□ -1.91
SKA3Q8IX90 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.1□□□□□ -1.91
SKA3Q8IX90 MTCYBP27-201ENST00000555160 670 ntBASIC3.1□□□□□ -1.91
SKA3Q8IX90 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC3.1□□□□□ -1.91
SKA3Q8IX90 CFL2-206ENST00000556161 546 ntTSL 4 BASIC3.1□□□□□ -1.91
SKA3Q8IX90 SULT1C2P1-202ENST00000562418 459 ntBASIC3.1□□□□□ -1.91
SKA3Q8IX90 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC3.1□□□□□ -1.91
SKA3Q8IX90 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC3.1□□□□□ -1.91
SKA3Q8IX90 AC010928.3-201ENST00000587712 541 ntBASIC3.1□□□□□ -1.91
SKA3Q8IX90 VN1R83P-201ENST00000595685 445 ntBASIC3.1□□□□□ -1.91
SKA3Q8IX90 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC3.1□□□□□ -1.91
SKA3Q8IX90 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.1□□□□□ -1.91
SKA3Q8IX90 AC011468.4-201ENST00000603942 409 ntBASIC3.1□□□□□ -1.91
SKA3Q8IX90 AL121895.2-201ENST00000619558 447 ntBASIC3.1□□□□□ -1.91
SKA3Q8IX90 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC3.1□□□□□ -1.91
SKA3Q8IX90 AC009093.8-201ENST00000641769 292 ntBASIC3.1□□□□□ -1.91
SKA3Q8IX90 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
SKA3Q8IX90 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
SKA3Q8IX90 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
SKA3Q8IX90 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
SKA3Q8IX90 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
SKA3Q8IX90 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.1□□□□□ -1.91
SKA3Q8IX90 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
SKA3Q8IX90 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
SKA3Q8IX90 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC3.1□□□□□ -1.91
SKA3Q8IX90 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.91
SKA3Q8IX90 AL161912.2-201ENST00000565707 3007 ntBASIC3.09□□□□□ -1.91
SKA3Q8IX90 AC068647.1-201ENST00000489539 2265 ntBASIC3.09□□□□□ -1.91
SKA3Q8IX90 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.91
SKA3Q8IX90 ZNF734P-201ENST00000419494 1534 ntBASIC3.09□□□□□ -1.91
SKA3Q8IX90 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.09□□□□□ -1.91
SKA3Q8IX90 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
SKA3Q8IX90 FRG1CP-201ENST00000358464 769 ntBASIC3.09□□□□□ -1.91
SKA3Q8IX90 RNU6-251P-201ENST00000363235 104 ntBASIC3.09□□□□□ -1.91
SKA3Q8IX90 SNORA62.3-201ENST00000365110 153 ntBASIC3.09□□□□□ -1.91
SKA3Q8IX90 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
SKA3Q8IX90 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC3.09□□□□□ -1.91
SKA3Q8IX90 SUGT1P1-201ENST00000379514 476 ntBASIC3.09□□□□□ -1.91
SKA3Q8IX90 RNU6-657P-201ENST00000383904 107 ntBASIC3.09□□□□□ -1.91
SKA3Q8IX90 Y_RNA.472-201ENST00000384322 102 ntBASIC3.09□□□□□ -1.91
SKA3Q8IX90 SNORD116-12-201ENST00000384468 92 ntBASIC3.09□□□□□ -1.91
SKA3Q8IX90 MIR591-201ENST00000385290 95 ntBASIC3.09□□□□□ -1.91
SKA3Q8IX90 RNU6-1300P-201ENST00000391046 108 ntBASIC3.09□□□□□ -1.91
SKA3Q8IX90 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
SKA3Q8IX90 AL136116.1-201ENST00000403591 381 ntBASIC3.09□□□□□ -1.91
SKA3Q8IX90 TANK-206ENST00000406287 875 ntTSL 5 BASIC3.09□□□□□ -1.91
SKA3Q8IX90 RPL23AP47-201ENST00000408017 460 ntBASIC3.09□□□□□ -1.91
SKA3Q8IX90 RN7SKP53-201ENST00000411337 315 ntBASIC3.09□□□□□ -1.91
SKA3Q8IX90 Z75741.2-201ENST00000417272 1167 ntBASIC3.09□□□□□ -1.91
SKA3Q8IX90 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC3.09□□□□□ -1.91
SKA3Q8IX90 MTCYBP24-201ENST00000420387 1106 ntBASIC3.09□□□□□ -1.91
SKA3Q8IX90 AC012498.1-201ENST00000424037 437 ntBASIC3.09□□□□□ -1.91
SKA3Q8IX90 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
SKA3Q8IX90 AL158071.1-201ENST00000430315 461 ntBASIC3.09□□□□□ -1.91
SKA3Q8IX90 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC3.09□□□□□ -1.91
SKA3Q8IX90 HSPD1P21-201ENST00000436541 245 ntBASIC3.09□□□□□ -1.91
SKA3Q8IX90 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC3.09□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms