Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 RPL23AP22-201ENST00000437556 453 ntBASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 AC122718.1-201ENST00000439448 744 ntBASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 ARF4P4-201ENST00000439608 520 ntBASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 AC004022.1-201ENST00000447766 1066 ntBASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 AL034418.1-201ENST00000448675 860 ntBASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 HMGB1P15-201ENST00000453854 435 ntBASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 AC244505.3-201ENST00000454598 187 ntBASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 NECAP1P2-201ENST00000455668 727 ntBASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 TRBV26-201ENST00000456572 344 ntBASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 MTCO3P2-201ENST00000457365 171 ntBASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 FAM133DP-201ENST00000464802 691 ntBASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 AC114967.1-201ENST00000504890 259 ntBASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 AC023632.1-201ENST00000518463 375 ntBASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 AC068657.1-201ENST00000520807 306 ntBASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 ARL2BPP5-201ENST00000523141 481 ntBASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 OR8I1P-201ENST00000529291 931 ntBASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 AC004024.1-201ENST00000549244 247 ntBASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 AC015917.1-201ENST00000579654 510 ntBASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 AC008507.2-201ENST00000588402 1176 ntBASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 AC093227.2-201ENST00000589357 285 ntBASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 AC103881.1-201ENST00000603476 538 ntBASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 AC092574.1-201ENST00000609771 420 ntBASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 AC039056.2-201ENST00000622261 511 ntBASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.67□□□□□ -1.82
CCDC40Q4G0X9 DBF4P1-201ENST00000412976 1892 ntBASIC3.67□□□□□ -1.82
CCDC40Q4G0X9 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
CCDC40Q4G0X9 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC40Q4G0X9 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC40Q4G0X9 MIR217-201ENST00000384817 110 ntBASIC3.67□□□□□ -1.82
CCDC40Q4G0X9 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC40Q4G0X9 AL133264.1-201ENST00000407157 562 ntBASIC3.67□□□□□ -1.82
CCDC40Q4G0X9 UQCRFS1P3-201ENST00000407697 385 ntBASIC3.67□□□□□ -1.82
CCDC40Q4G0X9 RNA5SP107-201ENST00000411358 122 ntBASIC3.67□□□□□ -1.82
CCDC40Q4G0X9 AL136133.1-201ENST00000413694 376 ntBASIC3.67□□□□□ -1.82
CCDC40Q4G0X9 RPS29P4-201ENST00000414733 161 ntBASIC3.67□□□□□ -1.82
CCDC40Q4G0X9 RPL36AP36-201ENST00000418616 301 ntBASIC3.67□□□□□ -1.82
CCDC40Q4G0X9 AC006548.1-201ENST00000427470 102 ntBASIC3.67□□□□□ -1.82
CCDC40Q4G0X9 AC092641.1-201ENST00000440229 772 ntBASIC3.67□□□□□ -1.82
CCDC40Q4G0X9 RPL23AP16-201ENST00000441715 421 ntBASIC3.67□□□□□ -1.82
CCDC40Q4G0X9 RBMY2UP-201ENST00000453474 324 ntBASIC3.67□□□□□ -1.82
CCDC40Q4G0X9 NDUFAF4P3-201ENST00000456468 525 ntBASIC3.67□□□□□ -1.82
CCDC40Q4G0X9 AC092185.1-201ENST00000491371 97 ntBASIC3.67□□□□□ -1.82
CCDC40Q4G0X9 ACTR3BP4-201ENST00000503033 1244 ntBASIC3.67□□□□□ -1.82
CCDC40Q4G0X9 AC084024.2-201ENST00000503480 791 ntBASIC3.67□□□□□ -1.82
CCDC40Q4G0X9 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC40Q4G0X9 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC40Q4G0X9 APOOP4-201ENST00000513530 597 ntBASIC3.67□□□□□ -1.82
CCDC40Q4G0X9 SNORA31.20-201ENST00000517111 133 ntBASIC3.67□□□□□ -1.82
CCDC40Q4G0X9 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC3.67□□□□□ -1.82
CCDC40Q4G0X9 IGKV2-26-201ENST00000518305 343 ntBASIC3.67□□□□□ -1.82
CCDC40Q4G0X9 AC019227.1-201ENST00000526902 510 ntBASIC3.67□□□□□ -1.82
CCDC40Q4G0X9 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC3.67□□□□□ -1.82
CCDC40Q4G0X9 ZNF705CP-201ENST00000530515 889 ntBASIC3.67□□□□□ -1.82
CCDC40Q4G0X9 OR5B10P-201ENST00000532869 642 ntBASIC3.67□□□□□ -1.82
CCDC40Q4G0X9 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.67□□□□□ -1.82
CCDC40Q4G0X9 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.67□□□□□ -1.82
CCDC40Q4G0X9 CFL2-206ENST00000556161 546 ntTSL 4 BASIC3.67□□□□□ -1.82
CCDC40Q4G0X9 AC044913.1-201ENST00000557200 430 ntBASIC3.67□□□□□ -1.82
CCDC40Q4G0X9 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.67□□□□□ -1.82
CCDC40Q4G0X9 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
CCDC40Q4G0X9 AC073968.1-201ENST00000618594 637 ntBASIC3.67□□□□□ -1.82
CCDC40Q4G0X9 CR381572.1-201ENST00000625098 102 ntBASIC3.67□□□□□ -1.82
CCDC40Q4G0X9 LINC00836-203ENST00000628620 1179 ntTSL 5 BASIC3.67□□□□□ -1.82
CCDC40Q4G0X9 AC127502.3-201ENST00000636170 1206 ntBASIC3.67□□□□□ -1.82
CCDC40Q4G0X9 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.67□□□□□ -1.82
CCDC40Q4G0X9 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC40Q4G0X9 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC40Q4G0X9 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC40Q4G0X9 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC3.67□□□□□ -1.82
CCDC40Q4G0X9 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC3.67□□□□□ -1.82
CCDC40Q4G0X9 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 CR383658.2-201ENST00000547576 1525 ntBASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 AL035405.1-201ENST00000400795 710 ntBASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 RN7SKP111-201ENST00000410349 271 ntBASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 AC069282.1-201ENST00000411911 526 ntBASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 Z93242.1-201ENST00000427102 353 ntBASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 BX890604.2-201ENST00000427883 474 ntBASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 AC127537.2-201ENST00000439258 465 ntBASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 HMGB3P11-201ENST00000440127 604 ntBASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 COX6CP18-201ENST00000448769 222 ntBASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 PABPC1P3-201ENST00000469174 459 ntBASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 RPS27AP1-201ENST00000475545 471 ntBASIC3.66□□□□□ -1.82
CCDC40Q4G0X9 AC012181.1-201ENST00000479895 423 ntBASIC3.66□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 96.4 ms