Protein–RNA interactions for Protein: Q15465

SHH, Sonic hedgehog protein, humanhuman

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHHQ15465 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.2□□□□□ -1.9
SHHQ15465 AC099489.2-201ENST00000574976 260 ntBASIC3.2□□□□□ -1.9
SHHQ15465 LLPHP1-201ENST00000603571 367 ntBASIC3.2□□□□□ -1.9
SHHQ15465 AC004832.5-201ENST00000608677 401 ntBASIC3.2□□□□□ -1.9
SHHQ15465 AL450489.1-201ENST00000612071 468 ntBASIC3.2□□□□□ -1.9
SHHQ15465 U6.48-201ENST00000618523 106 ntBASIC3.2□□□□□ -1.9
SHHQ15465 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC3.2□□□□□ -1.9
SHHQ15465 AC091903.1-201ENST00000624322 454 ntBASIC3.2□□□□□ -1.9
SHHQ15465 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
SHHQ15465 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC3.2□□□□□ -1.9
SHHQ15465 AC091948.2-201ENST00000636510 279 ntBASIC3.2□□□□□ -1.9
SHHQ15465 CR381670.1-201ENST00000624291 1693 ntBASIC3.2□□□□□ -1.9
SHHQ15465 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.2□□□□□ -1.9
SHHQ15465 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
SHHQ15465 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC3.2□□□□□ -1.9
SHHQ15465 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
SHHQ15465 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
SHHQ15465 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
SHHQ15465 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
SHHQ15465 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
SHHQ15465 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC3.19□□□□□ -1.9
SHHQ15465 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.19□□□□□ -1.9
SHHQ15465 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
SHHQ15465 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
SHHQ15465 FAM133CP-201ENST00000332869 704 ntBASIC3.19□□□□□ -1.9
SHHQ15465 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
SHHQ15465 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
SHHQ15465 AL353692.2-201ENST00000407054 335 ntBASIC3.19□□□□□ -1.9
SHHQ15465 AC007390.1-201ENST00000415722 356 ntBASIC3.19□□□□□ -1.9
SHHQ15465 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.19□□□□□ -1.9
SHHQ15465 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.19□□□□□ -1.9
SHHQ15465 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC3.19□□□□□ -1.9
SHHQ15465 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC3.19□□□□□ -1.9
SHHQ15465 RPL17P35-201ENST00000432217 549 ntBASIC3.19□□□□□ -1.9
SHHQ15465 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC3.19□□□□□ -1.9
SHHQ15465 Z99127.3-201ENST00000448158 395 ntBASIC3.19□□□□□ -1.9
SHHQ15465 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC3.19□□□□□ -1.9
SHHQ15465 RPL12P26-201ENST00000452430 487 ntBASIC3.19□□□□□ -1.9
SHHQ15465 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC3.19□□□□□ -1.9
SHHQ15465 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC3.19□□□□□ -1.9
SHHQ15465 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC3.19□□□□□ -1.9
SHHQ15465 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC3.19□□□□□ -1.9
SHHQ15465 THAP6-203ENST00000502620 582 ntTSL 3 BASIC3.19□□□□□ -1.9
SHHQ15465 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC3.19□□□□□ -1.9
SHHQ15465 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC3.19□□□□□ -1.9
SHHQ15465 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC3.19□□□□□ -1.9
SHHQ15465 RNU6-467P-201ENST00000517027 110 ntBASIC3.19□□□□□ -1.9
SHHQ15465 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC3.19□□□□□ -1.9
SHHQ15465 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC3.19□□□□□ -1.9
SHHQ15465 OR5G4P-201ENST00000525251 760 ntBASIC3.19□□□□□ -1.9
SHHQ15465 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
SHHQ15465 PTP4A1P6-201ENST00000531034 478 ntBASIC3.19□□□□□ -1.9
SHHQ15465 AP002770.2-201ENST00000543613 532 ntBASIC3.19□□□□□ -1.9
SHHQ15465 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC3.19□□□□□ -1.9
SHHQ15465 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC3.19□□□□□ -1.9
SHHQ15465 AC090312.2-201ENST00000582687 378 ntBASIC3.19□□□□□ -1.9
SHHQ15465 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC3.19□□□□□ -1.9
SHHQ15465 AC008764.5-201ENST00000597851 190 ntTSL 5 BASIC3.19□□□□□ -1.9
SHHQ15465 AC024153.1-201ENST00000603103 365 ntBASIC3.19□□□□□ -1.9
SHHQ15465 AC096947.1-201ENST00000603233 470 ntBASIC3.19□□□□□ -1.9
SHHQ15465 AC011458.1-201ENST00000604034 617 ntBASIC3.19□□□□□ -1.9
SHHQ15465 AC016542.1-201ENST00000608259 493 ntBASIC3.19□□□□□ -1.9
SHHQ15465 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
SHHQ15465 AF117829.1-206ENST00000621883 3802 ntBASIC3.19□□□□□ -1.9
SHHQ15465 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
SHHQ15465 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
SHHQ15465 AC000367.1-201ENST00000452711 1766 ntBASIC3.18□□□□□ -1.9
SHHQ15465 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
SHHQ15465 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
SHHQ15465 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC3.18□□□□□ -1.9
SHHQ15465 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.18□□□□□ -1.9
SHHQ15465 AC073325.2-201ENST00000339545 159 ntBASIC3.18□□□□□ -1.9
SHHQ15465 CD2-201ENST00000369477 478 ntTSL 2 BASIC3.18□□□□□ -1.9
SHHQ15465 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC3.18□□□□□ -1.9
SHHQ15465 STATH-202ENST00000381060 534 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
SHHQ15465 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.18□□□□□ -1.9
SHHQ15465 MIR184-201ENST00000384962 84 ntBASIC3.18□□□□□ -1.9
SHHQ15465 HNRNPDP2-201ENST00000406475 478 ntBASIC3.18□□□□□ -1.9
SHHQ15465 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC3.18□□□□□ -1.9
SHHQ15465 SRIP2-201ENST00000428470 166 ntBASIC3.18□□□□□ -1.9
SHHQ15465 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC3.18□□□□□ -1.9
SHHQ15465 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
SHHQ15465 AC105402.2-201ENST00000438503 358 ntBASIC3.18□□□□□ -1.9
SHHQ15465 MTCYBP31-201ENST00000438855 1122 ntBASIC3.18□□□□□ -1.9
SHHQ15465 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC3.18□□□□□ -1.9
SHHQ15465 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
SHHQ15465 AC111193.1-201ENST00000504097 155 ntBASIC3.18□□□□□ -1.9
SHHQ15465 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
SHHQ15465 AC110792.2-201ENST00000510278 224 ntBASIC3.18□□□□□ -1.9
SHHQ15465 MIR2276-201ENST00000516886 89 ntBASIC3.18□□□□□ -1.9
SHHQ15465 RN7SKP283-201ENST00000517197 270 ntBASIC3.18□□□□□ -1.9
SHHQ15465 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC3.18□□□□□ -1.9
SHHQ15465 AL121576.1-201ENST00000556055 276 ntBASIC3.18□□□□□ -1.9
SHHQ15465 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.18□□□□□ -1.9
SHHQ15465 AL158827.2-201ENST00000602494 330 ntBASIC3.18□□□□□ -1.9
SHHQ15465 AL592295.2-201ENST00000612578 206 ntBASIC3.18□□□□□ -1.9
SHHQ15465 AL691447.3-201ENST00000635020 330 ntBASIC3.18□□□□□ -1.9
SHHQ15465 AL590396.2-201ENST00000636511 1041 ntBASIC3.18□□□□□ -1.9
SHHQ15465 AC106858.1-201ENST00000637497 429 ntBASIC3.18□□□□□ -1.9
SHHQ15465 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.18□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms