Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC068533.1-201ENST00000418542 415 ntBASIC5.07□□□□□ -1.6
RNF4P78317 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC5.07□□□□□ -1.6
RNF4P78317 BRWD1P3-201ENST00000428816 390 ntBASIC5.07□□□□□ -1.6
RNF4P78317 CFL1P1-202ENST00000432948 411 ntBASIC5.07□□□□□ -1.6
RNF4P78317 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC5.07□□□□□ -1.6
RNF4P78317 RPL21P133-201ENST00000443666 476 ntBASIC5.07□□□□□ -1.6
RNF4P78317 Z80107.2-201ENST00000445127 392 ntBASIC5.07□□□□□ -1.6
RNF4P78317 AL031584.1-201ENST00000447169 754 ntBASIC5.07□□□□□ -1.6
RNF4P78317 RPS17P13-201ENST00000448974 407 ntBASIC5.07□□□□□ -1.6
RNF4P78317 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC5.07□□□□□ -1.6
RNF4P78317 SNRPFP3-201ENST00000457792 225 ntBASIC5.07□□□□□ -1.6
RNF4P78317 Y_RNA.631-201ENST00000459607 101 ntBASIC5.07□□□□□ -1.6
RNF4P78317 AC012181.1-201ENST00000479895 423 ntBASIC5.07□□□□□ -1.6
RNF4P78317 AC068587.1-201ENST00000483613 781 ntBASIC5.07□□□□□ -1.6
RNF4P78317 AL049874.2-201ENST00000492636 288 ntBASIC5.07□□□□□ -1.6
RNF4P78317 MTCO1P29-201ENST00000496868 288 ntBASIC5.07□□□□□ -1.6
RNF4P78317 AC091885.1-201ENST00000506658 268 ntBASIC5.07□□□□□ -1.6
RNF4P78317 KLHL2P1-201ENST00000508691 521 ntBASIC5.07□□□□□ -1.6
RNF4P78317 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC5.07□□□□□ -1.6
RNF4P78317 RNU6-864P-201ENST00000516256 108 ntBASIC5.07□□□□□ -1.6
RNF4P78317 SCARNA16.4-201ENST00000516956 187 ntBASIC5.07□□□□□ -1.6
RNF4P78317 RNU6-64P-201ENST00000517119 105 ntBASIC5.07□□□□□ -1.6
RNF4P78317 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
RNF4P78317 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC5.07□□□□□ -1.6
RNF4P78317 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC5.07□□□□□ -1.6
RNF4P78317 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC5.07□□□□□ -1.6
RNF4P78317 AL359219.2-201ENST00000555184 348 ntBASIC5.07□□□□□ -1.6
RNF4P78317 AC006270.2-201ENST00000578523 652 ntBASIC5.07□□□□□ -1.6
RNF4P78317 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC5.07□□□□□ -1.6
RNF4P78317 BNIP3P25-201ENST00000596023 559 ntBASIC5.07□□□□□ -1.6
RNF4P78317 AC007566.2-201ENST00000603642 413 ntBASIC5.07□□□□□ -1.6
RNF4P78317 SNRPGP17-201ENST00000603780 214 ntBASIC5.07□□□□□ -1.6
RNF4P78317 TEX41-238ENST00000604253 709 ntTSL 5 BASIC5.07□□□□□ -1.6
RNF4P78317 AL355802.3-201ENST00000607571 545 ntBASIC5.07□□□□□ -1.6
RNF4P78317 ST6GALNAC3-203ENST00000621530 617 ntTSL 5 BASIC5.07□□□□□ -1.6
RNF4P78317 U6.114-201ENST00000636407 96 ntBASIC5.07□□□□□ -1.6
RNF4P78317 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
RNF4P78317 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC5.07□□□□□ -1.6
RNF4P78317 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC5.07□□□□□ -1.6
RNF4P78317 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC5.07□□□□□ -1.6
RNF4P78317 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
RNF4P78317 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC5.07□□□□□ -1.6
RNF4P78317 TEK-205ENST00000615002 4666 ntTSL 5 BASIC5.07□□□□□ -1.6
RNF4P78317 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
RNF4P78317 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC5.07□□□□□ -1.6
RNF4P78317 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
RNF4P78317 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC5.06□□□□□ -1.6
RNF4P78317 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
RNF4P78317 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
RNF4P78317 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC5.06□□□□□ -1.6
RNF4P78317 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
RNF4P78317 NXPH1-205ENST00000602349 1953 ntBASIC5.06□□□□□ -1.6
RNF4P78317 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC5.06□□□□□ -1.6
RNF4P78317 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
RNF4P78317 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
RNF4P78317 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
RNF4P78317 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
RNF4P78317 RNA5SP453-201ENST00000362503 119 ntBASIC5.06□□□□□ -1.6
RNF4P78317 SNORA16A-201ENST00000384342 137 ntBASIC5.06□□□□□ -1.6
RNF4P78317 RNU6-1160P-201ENST00000384546 104 ntBASIC5.06□□□□□ -1.6
RNF4P78317 RNY4P36-201ENST00000391116 96 ntBASIC5.06□□□□□ -1.6
RNF4P78317 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
RNF4P78317 RPL5P18-201ENST00000406671 891 ntBASIC5.06□□□□□ -1.6
RNF4P78317 RNU6ATAC18P-201ENST00000408413 101 ntBASIC5.06□□□□□ -1.6
RNF4P78317 RPS26P47-201ENST00000427219 348 ntBASIC5.06□□□□□ -1.6
RNF4P78317 Z82205.1-201ENST00000428456 297 ntBASIC5.06□□□□□ -1.6
RNF4P78317 TEX41-206ENST00000432608 661 ntTSL 3 BASIC5.06□□□□□ -1.6
RNF4P78317 RPS3AP52-201ENST00000435639 297 ntBASIC5.06□□□□□ -1.6
RNF4P78317 LINC01891-201ENST00000439798 538 ntTSL 4 BASIC5.06□□□□□ -1.6
RNF4P78317 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC5.06□□□□□ -1.6
RNF4P78317 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC5.06□□□□□ -1.6
RNF4P78317 RPS20P21-201ENST00000466859 343 ntBASIC5.06□□□□□ -1.6
RNF4P78317 AC087385.1-201ENST00000475062 312 ntBASIC5.06□□□□□ -1.6
RNF4P78317 RPL23AP11-201ENST00000475260 469 ntBASIC5.06□□□□□ -1.6
RNF4P78317 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC5.06□□□□□ -1.6
RNF4P78317 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC5.06□□□□□ -1.6
RNF4P78317 CCDC34P1-201ENST00000507441 517 ntBASIC5.06□□□□□ -1.6
RNF4P78317 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC5.06□□□□□ -1.6
RNF4P78317 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC5.06□□□□□ -1.6
RNF4P78317 AC005798.1-201ENST00000513715 387 ntBASIC5.06□□□□□ -1.6
RNF4P78317 RRM2B-206ENST00000519317 420 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
RNF4P78317 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC5.06□□□□□ -1.6
RNF4P78317 MDM2-233ENST00000545204 398 ntTSL 5 BASIC5.06□□□□□ -1.6
RNF4P78317 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC5.06□□□□□ -1.6
RNF4P78317 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC5.06□□□□□ -1.6
RNF4P78317 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC5.06□□□□□ -1.6
RNF4P78317 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC5.06□□□□□ -1.6
RNF4P78317 MIR4489-201ENST00000578869 62 ntBASIC5.06□□□□□ -1.6
RNF4P78317 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC5.06□□□□□ -1.6
RNF4P78317 AC245389.1-201ENST00000605141 529 ntBASIC5.06□□□□□ -1.6
RNF4P78317 AL390240.1-201ENST00000612950 384 ntBASIC5.06□□□□□ -1.6
RNF4P78317 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC5.06□□□□□ -1.6
RNF4P78317 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC5.06□□□□□ -1.6
RNF4P78317 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
RNF4P78317 MIR6837-201ENST00000620884 64 ntBASIC5.06□□□□□ -1.6
RNF4P78317 AC011155.2-201ENST00000623202 216 ntBASIC5.06□□□□□ -1.6
RNF4P78317 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
RNF4P78317 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC5.06□□□□□ -1.6
RNF4P78317 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC5.06□□□□□ -1.6
RNF4P78317 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 98.7 ms