Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AL161804.1-201ENST00000555600 708 ntTSL 3 BASIC3.81□□□□□ -1.8
MSH6P52701 AC023158.1-201ENST00000561632 1025 ntBASIC3.81□□□□□ -1.8
MSH6P52701 MIR4648-201ENST00000580107 72 ntBASIC3.81□□□□□ -1.8
MSH6P52701 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC3.81□□□□□ -1.8
MSH6P52701 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC3.81□□□□□ -1.8
MSH6P52701 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
MSH6P52701 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.8□□□□□ -1.8
MSH6P52701 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
MSH6P52701 Y_RNA.238-201ENST00000364441 102 ntBASIC3.8□□□□□ -1.8
MSH6P52701 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
MSH6P52701 RNU6-244P-201ENST00000391028 104 ntBASIC3.8□□□□□ -1.8
MSH6P52701 RNU6ATAC15P-201ENST00000408279 121 ntBASIC3.8□□□□□ -1.8
MSH6P52701 RN7SKP223-201ENST00000410582 62 ntBASIC3.8□□□□□ -1.8
MSH6P52701 RNA5SP498-201ENST00000411342 120 ntBASIC3.8□□□□□ -1.8
MSH6P52701 AC048351.1-201ENST00000420064 602 ntBASIC3.8□□□□□ -1.8
MSH6P52701 TRIM60P13-201ENST00000432350 1283 ntBASIC3.8□□□□□ -1.8
MSH6P52701 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC3.8□□□□□ -1.8
MSH6P52701 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC3.8□□□□□ -1.8
MSH6P52701 UQCRHP3-201ENST00000451503 251 ntBASIC3.8□□□□□ -1.8
MSH6P52701 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC3.8□□□□□ -1.8
MSH6P52701 OR5H5P-201ENST00000503164 928 ntBASIC3.8□□□□□ -1.8
MSH6P52701 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC3.8□□□□□ -1.8
MSH6P52701 SNORD116-26-201ENST00000516006 96 ntBASIC3.8□□□□□ -1.8
MSH6P52701 AC025260.1-201ENST00000548858 430 ntBASIC3.8□□□□□ -1.8
MSH6P52701 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC3.8□□□□□ -1.8
MSH6P52701 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC3.8□□□□□ -1.8
MSH6P52701 AL845331.3-202ENST00000562856 261 ntBASIC3.8□□□□□ -1.8
MSH6P52701 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC3.8□□□□□ -1.8
MSH6P52701 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC3.8□□□□□ -1.8
MSH6P52701 AL391834.1-201ENST00000609609 560 ntBASIC3.8□□□□□ -1.8
MSH6P52701 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
MSH6P52701 METTL8-218ENST00000638989 876 ntTSL 5 BASIC3.8□□□□□ -1.8
MSH6P52701 METTL8-219ENST00000640734 726 ntTSL 2 BASIC3.8□□□□□ -1.8
MSH6P52701 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
MSH6P52701 EXOC5P1-201ENST00000510543 1969 ntBASIC3.8□□□□□ -1.8
MSH6P52701 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
MSH6P52701 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.8□□□□□ -1.8
MSH6P52701 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.8□□□□□ -1.8
MSH6P52701 AL583834.1-201ENST00000406943 343 ntBASIC3.79□□□□□ -1.8
MSH6P52701 RNU4-53P-201ENST00000410828 140 ntBASIC3.79□□□□□ -1.8
MSH6P52701 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC3.79□□□□□ -1.8
MSH6P52701 OR51A3P-201ENST00000413596 924 ntBASIC3.79□□□□□ -1.8
MSH6P52701 AL135786.1-201ENST00000415892 214 ntBASIC3.79□□□□□ -1.8
MSH6P52701 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC3.79□□□□□ -1.8
MSH6P52701 RN7SL75P-201ENST00000461926 281 ntBASIC3.79□□□□□ -1.8
MSH6P52701 AC093278.1-201ENST00000494700 600 ntBASIC3.79□□□□□ -1.8
MSH6P52701 KLHL2P1-201ENST00000508691 521 ntBASIC3.79□□□□□ -1.8
MSH6P52701 RNU6-548P-201ENST00000517083 115 ntBASIC3.79□□□□□ -1.8
MSH6P52701 AC019227.1-201ENST00000526902 510 ntBASIC3.79□□□□□ -1.8
MSH6P52701 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC3.79□□□□□ -1.8
MSH6P52701 AL389895.1-201ENST00000554127 252 ntBASIC3.79□□□□□ -1.8
MSH6P52701 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.79□□□□□ -1.8
MSH6P52701 AC090953.1-201ENST00000604305 1092 ntBASIC3.79□□□□□ -1.8
MSH6P52701 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC3.79□□□□□ -1.8
MSH6P52701 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
MSH6P52701 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
MSH6P52701 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
MSH6P52701 RNVU1-3-201ENST00000364313 161 ntBASIC3.78□□□□□ -1.8
MSH6P52701 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
MSH6P52701 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC3.78□□□□□ -1.8
MSH6P52701 AL139415.2-201ENST00000431968 163 ntBASIC3.78□□□□□ -1.8
MSH6P52701 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC3.78□□□□□ -1.8
MSH6P52701 AC114878.1-201ENST00000441166 358 ntBASIC3.78□□□□□ -1.8
MSH6P52701 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC3.78□□□□□ -1.8
MSH6P52701 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
MSH6P52701 TAB3P1-202ENST00000452645 1634 ntBASIC3.78□□□□□ -1.8
MSH6P52701 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC3.78□□□□□ -1.8
MSH6P52701 AC005912.1-201ENST00000495392 255 ntBASIC3.78□□□□□ -1.8
MSH6P52701 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC3.78□□□□□ -1.8
MSH6P52701 RNU6-1004P-201ENST00000516584 111 ntBASIC3.78□□□□□ -1.8
MSH6P52701 AC245166.1-201ENST00000521012 253 ntBASIC3.78□□□□□ -1.8
MSH6P52701 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC3.78□□□□□ -1.8
MSH6P52701 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC3.78□□□□□ -1.8
MSH6P52701 AP003102.1-201ENST00000525638 661 ntBASIC3.78□□□□□ -1.8
MSH6P52701 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC3.78□□□□□ -1.8
MSH6P52701 AC078899.3-201ENST00000599065 212 ntBASIC3.78□□□□□ -1.8
MSH6P52701 PSMA6P4-201ENST00000603247 718 ntBASIC3.78□□□□□ -1.8
MSH6P52701 AC007621.1-201ENST00000604544 437 ntBASIC3.78□□□□□ -1.8
MSH6P52701 AC242628.1-201ENST00000606810 391 ntBASIC3.78□□□□□ -1.8
MSH6P52701 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC3.78□□□□□ -1.8
MSH6P52701 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC3.78□□□□□ -1.8
MSH6P52701 AC020658.4-201ENST00000613987 684 ntBASIC3.78□□□□□ -1.8
MSH6P52701 AC011472.4-201ENST00000615848 491 ntBASIC3.78□□□□□ -1.8
MSH6P52701 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
MSH6P52701 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC3.78□□□□□ -1.8
MSH6P52701 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
MSH6P52701 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC3.77□□□□□ -1.81
MSH6P52701 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
MSH6P52701 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC3.77□□□□□ -1.81
MSH6P52701 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.77□□□□□ -1.81
MSH6P52701 XIAPP3-201ENST00000312918 795 ntBASIC3.77□□□□□ -1.81
MSH6P52701 SNORA62.2-201ENST00000364672 152 ntBASIC3.77□□□□□ -1.81
MSH6P52701 ATP5F1P6-201ENST00000402768 767 ntBASIC3.77□□□□□ -1.81
MSH6P52701 MTCO3P31-201ENST00000405526 789 ntBASIC3.77□□□□□ -1.81
MSH6P52701 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC3.77□□□□□ -1.81
MSH6P52701 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC3.77□□□□□ -1.81
MSH6P52701 RPL7P31-201ENST00000450192 724 ntBASIC3.77□□□□□ -1.81
MSH6P52701 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC3.77□□□□□ -1.81
MSH6P52701 AL590639.1-201ENST00000456484 337 ntBASIC3.77□□□□□ -1.81
MSH6P52701 AC090543.1-201ENST00000492168 485 ntBASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 96.9 ms