Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC2.53□□□□□ -2
CPSF4O95639 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.53□□□□□ -2
CPSF4O95639 RNU1-112P-201ENST00000364401 164 ntBASIC2.53□□□□□ -2
CPSF4O95639 UBA52P6-201ENST00000399822 382 ntBASIC2.53□□□□□ -2
CPSF4O95639 TATDN1P1-201ENST00000414123 891 ntBASIC2.53□□□□□ -2
CPSF4O95639 AL357078.2-201ENST00000416486 427 ntBASIC2.53□□□□□ -2
CPSF4O95639 PNRC2P1-201ENST00000423940 420 ntBASIC2.53□□□□□ -2
CPSF4O95639 TRIAP1P1-201ENST00000427062 225 ntBASIC2.53□□□□□ -2
CPSF4O95639 SAR1AP4-201ENST00000429225 591 ntBASIC2.53□□□□□ -2
CPSF4O95639 AC005189.1-201ENST00000431286 310 ntBASIC2.53□□□□□ -2
CPSF4O95639 AC087499.2-201ENST00000432861 149 ntBASIC2.53□□□□□ -2
CPSF4O95639 PTP4A1P3-201ENST00000433661 420 ntBASIC2.53□□□□□ -2
CPSF4O95639 RPL39P40-201ENST00000445481 146 ntBASIC2.53□□□□□ -2
CPSF4O95639 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC2.53□□□□□ -2
CPSF4O95639 AC090525.1-201ENST00000479116 478 ntBASIC2.53□□□□□ -2
CPSF4O95639 TMED11P-201ENST00000479478 690 ntBASIC2.53□□□□□ -2
CPSF4O95639 AC078817.1-201ENST00000492623 435 ntBASIC2.53□□□□□ -2
CPSF4O95639 AC090071.1-201ENST00000507713 644 ntBASIC2.53□□□□□ -2
CPSF4O95639 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC2.53□□□□□ -2
CPSF4O95639 AC100870.1-201ENST00000522035 505 ntBASIC2.53□□□□□ -2
CPSF4O95639 CD69-203ENST00000536709 1020 ntTSL 2 BASIC2.53□□□□□ -2
CPSF4O95639 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC2.53□□□□□ -2
CPSF4O95639 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC2.53□□□□□ -2
CPSF4O95639 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC2.53□□□□□ -2
CPSF4O95639 SNRPGP1-201ENST00000553864 222 ntBASIC2.53□□□□□ -2
CPSF4O95639 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC2.53□□□□□ -2
CPSF4O95639 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
CPSF4O95639 AC113194.1-201ENST00000606037 500 ntBASIC2.53□□□□□ -2
CPSF4O95639 AP001033.2-201ENST00000609701 1003 ntBASIC2.53□□□□□ -2
CPSF4O95639 AC096577.2-201ENST00000611455 153 ntBASIC2.53□□□□□ -2
CPSF4O95639 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC2.53□□□□□ -2
CPSF4O95639 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC2.53□□□□□ -2
CPSF4O95639 AC121761.2-201ENST00000617300 689 ntBASIC2.53□□□□□ -2
CPSF4O95639 CC2D2B-209ENST00000618242 980 ntTSL 5 BASIC2.53□□□□□ -2
CPSF4O95639 PCNP-208ENST00000627393 136 ntTSL 2 BASIC2.53□□□□□ -2
CPSF4O95639 MIR4278-201ENST00000636094 69 ntBASIC2.53□□□□□ -2
CPSF4O95639 AC083865.1-201ENST00000636634 831 ntBASIC2.53□□□□□ -2
CPSF4O95639 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC2.53□□□□□ -2
CPSF4O95639 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC2.53□□□□□ -2
CPSF4O95639 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC2.53□□□□□ -2.01
CPSF4O95639 C2orf76-201ENST00000334816 676 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
CPSF4O95639 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
CPSF4O95639 RNU6-543P-201ENST00000362576 108 ntBASIC2.52□□□□□ -2.01
CPSF4O95639 RNU1-140P-201ENST00000365040 165 ntBASIC2.52□□□□□ -2.01
CPSF4O95639 SNORD21-201ENST00000383953 95 ntBASIC2.52□□□□□ -2.01
CPSF4O95639 MIR592-201ENST00000384959 97 ntBASIC2.52□□□□□ -2.01
CPSF4O95639 RNU2-37P-201ENST00000410695 177 ntBASIC2.52□□□□□ -2.01
CPSF4O95639 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
CPSF4O95639 AC023347.2-201ENST00000433994 462 ntBASIC2.52□□□□□ -2.01
CPSF4O95639 HMGN2P21-201ENST00000447764 270 ntBASIC2.52□□□□□ -2.01
CPSF4O95639 PTGES3P5-201ENST00000455109 434 ntBASIC2.52□□□□□ -2.01
CPSF4O95639 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC2.52□□□□□ -2.01
CPSF4O95639 RPL37P6-202ENST00000464216 403 ntBASIC2.52□□□□□ -2.01
CPSF4O95639 AC008571.1-201ENST00000467232 300 ntBASIC2.52□□□□□ -2.01
CPSF4O95639 AC017015.1-201ENST00000477387 286 ntBASIC2.52□□□□□ -2.01
CPSF4O95639 RN7SL499P-201ENST00000481141 276 ntBASIC2.52□□□□□ -2.01
CPSF4O95639 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC2.52□□□□□ -2.01
CPSF4O95639 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
CPSF4O95639 CAPZA2-212ENST00000490693 809 ntTSL 2 BASIC2.52□□□□□ -2.01
CPSF4O95639 RPL5P23-201ENST00000496040 868 ntBASIC2.52□□□□□ -2.01
CPSF4O95639 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.52□□□□□ -2.01
CPSF4O95639 SETP12-201ENST00000514068 805 ntBASIC2.52□□□□□ -2.01
CPSF4O95639 AC008494.2-201ENST00000514544 370 ntBASIC2.52□□□□□ -2.01
CPSF4O95639 RN7SKP82-201ENST00000516786 223 ntBASIC2.52□□□□□ -2.01
CPSF4O95639 RN7SKP283-201ENST00000517197 270 ntBASIC2.52□□□□□ -2.01
CPSF4O95639 LY96-202ENST00000518893 430 ntTSL 3 BASIC2.52□□□□□ -2.01
CPSF4O95639 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC2.52□□□□□ -2.01
CPSF4O95639 AC008562.1-201ENST00000521763 330 ntBASIC2.52□□□□□ -2.01
CPSF4O95639 AC010306.1-201ENST00000523223 1117 ntBASIC2.52□□□□□ -2.01
CPSF4O95639 AC139103.1-201ENST00000534696 1030 ntBASIC2.52□□□□□ -2.01
CPSF4O95639 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC2.52□□□□□ -2.01
CPSF4O95639 AC007954.1-201ENST00000554198 494 ntBASIC2.52□□□□□ -2.01
CPSF4O95639 OR4T1P-201ENST00000554933 911 ntBASIC2.52□□□□□ -2.01
CPSF4O95639 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC2.52□□□□□ -2.01
CPSF4O95639 LINC00557-201ENST00000563184 1279 ntBASIC2.52□□□□□ -2.01
CPSF4O95639 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC2.52□□□□□ -2.01
CPSF4O95639 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC2.52□□□□□ -2.01
CPSF4O95639 NTAN1P1-201ENST00000603150 646 ntBASIC2.52□□□□□ -2.01
CPSF4O95639 KATNBL1P5-201ENST00000605015 517 ntBASIC2.52□□□□□ -2.01
CPSF4O95639 HNRNPDLP4-201ENST00000605144 301 ntBASIC2.52□□□□□ -2.01
CPSF4O95639 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
CPSF4O95639 BX664608.1-201ENST00000610519 487 ntBASIC2.52□□□□□ -2.01
CPSF4O95639 AP006248.3-201ENST00000623580 594 ntBASIC2.52□□□□□ -2.01
CPSF4O95639 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC2.52□□□□□ -2.01
CPSF4O95639 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC2.52□□□□□ -2.01
CPSF4O95639 MTND5P11-201ENST00000511037 1812 ntBASIC2.52□□□□□ -2.01
CPSF4O95639 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC2.51□□□□□ -2.01
CPSF4O95639 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC2.51□□□□□ -2.01
CPSF4O95639 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.51□□□□□ -2.01
CPSF4O95639 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
CPSF4O95639 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
CPSF4O95639 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
CPSF4O95639 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
CPSF4O95639 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
CPSF4O95639 RNU6-796P-201ENST00000391086 107 ntBASIC2.51□□□□□ -2.01
CPSF4O95639 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC2.51□□□□□ -2.01
CPSF4O95639 AL139281.1-201ENST00000422120 335 ntBASIC2.51□□□□□ -2.01
CPSF4O95639 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC2.51□□□□□ -2.01
CPSF4O95639 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC2.51□□□□□ -2.01
CPSF4O95639 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC2.51□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 118.1 ms