Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 RNA5SP220-201ENST00000516298 104 ntBASIC1.95□□□□□ -2.1
COL6A5A8TX70 AC027701.1-202ENST00000520988 459 ntTSL 3 BASIC1.95□□□□□ -2.1
COL6A5A8TX70 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC1.95□□□□□ -2.1
COL6A5A8TX70 AP003385.6-201ENST00000531603 374 ntBASIC1.95□□□□□ -2.1
COL6A5A8TX70 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC1.95□□□□□ -2.1
COL6A5A8TX70 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
COL6A5A8TX70 AC025946.2-201ENST00000603398 234 ntBASIC1.95□□□□□ -2.1
COL6A5A8TX70 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC1.95□□□□□ -2.1
COL6A5A8TX70 RNU1-35P-201ENST00000362782 153 ntBASIC1.94□□□□□ -2.1
COL6A5A8TX70 AL445213.1-201ENST00000412589 747 ntBASIC1.94□□□□□ -2.1
COL6A5A8TX70 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC1.94□□□□□ -2.1
COL6A5A8TX70 AL589765.3-201ENST00000446084 462 ntBASIC1.94□□□□□ -2.1
COL6A5A8TX70 AC093392.2-201ENST00000450682 337 ntBASIC1.94□□□□□ -2.1
COL6A5A8TX70 RPL23AP31-201ENST00000456160 467 ntBASIC1.94□□□□□ -2.1
COL6A5A8TX70 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC1.94□□□□□ -2.1
COL6A5A8TX70 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC1.94□□□□□ -2.1
COL6A5A8TX70 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC1.94□□□□□ -2.1
COL6A5A8TX70 AC034244.2-201ENST00000514668 858 ntBASIC1.94□□□□□ -2.1
COL6A5A8TX70 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
COL6A5A8TX70 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC1.94□□□□□ -2.1
COL6A5A8TX70 AL133271.1-201ENST00000538229 291 ntBASIC1.94□□□□□ -2.1
COL6A5A8TX70 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC1.94□□□□□ -2.1
COL6A5A8TX70 DISC1FP1-203ENST00000562678 796 ntTSL 3 BASIC1.94□□□□□ -2.1
COL6A5A8TX70 AC090115.4-201ENST00000609970 188 ntBASIC1.94□□□□□ -2.1
COL6A5A8TX70 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC1.94□□□□□ -2.1
COL6A5A8TX70 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC1.94□□□□□ -2.1
COL6A5A8TX70 MTCO1P22-201ENST00000604619 1360 ntBASIC1.94□□□□□ -2.1
COL6A5A8TX70 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
COL6A5A8TX70 Z99496.1-201ENST00000469424 1477 ntBASIC1.94□□□□□ -2.1
COL6A5A8TX70 CUL1P1-201ENST00000509510 2425 ntBASIC1.94□□□□□ -2.1
COL6A5A8TX70 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC1.94□□□□□ -2.1
COL6A5A8TX70 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC1.94□□□□□ -2.1
COL6A5A8TX70 MIR625-201ENST00000385047 85 ntBASIC1.94□□□□□ -2.1
COL6A5A8TX70 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC1.94□□□□□ -2.1
COL6A5A8TX70 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC1.94□□□□□ -2.1
COL6A5A8TX70 THAP6-203ENST00000502620 582 ntTSL 3 BASIC1.94□□□□□ -2.1
COL6A5A8TX70 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC1.94□□□□□ -2.1
COL6A5A8TX70 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC1.94□□□□□ -2.1
COL6A5A8TX70 AC008083.2-201ENST00000546707 476 ntBASIC1.94□□□□□ -2.1
COL6A5A8TX70 AL354943.1-201ENST00000572103 781 ntBASIC1.94□□□□□ -2.1
COL6A5A8TX70 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC1.94□□□□□ -2.1
COL6A5A8TX70 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC1.94□□□□□ -2.1
COL6A5A8TX70 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC1.94□□□□□ -2.1
COL6A5A8TX70 AC012078.1-201ENST00000405035 1646 ntBASIC1.94□□□□□ -2.1
COL6A5A8TX70 AC233981.2-201ENST00000611524 1614 ntBASIC1.94□□□□□ -2.1
COL6A5A8TX70 AC109315.1-201ENST00000584143 1347 ntBASIC1.93□□□□□ -2.1
COL6A5A8TX70 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC1.93□□□□□ -2.1
COL6A5A8TX70 RNU6-707P-201ENST00000364647 95 ntBASIC1.93□□□□□ -2.1
COL6A5A8TX70 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC1.93□□□□□ -2.1
COL6A5A8TX70 LAP3P1-201ENST00000403648 294 ntBASIC1.93□□□□□ -2.1
COL6A5A8TX70 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC1.93□□□□□ -2.1
COL6A5A8TX70 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC1.93□□□□□ -2.1
COL6A5A8TX70 RPS29P6-201ENST00000438196 145 ntBASIC1.93□□□□□ -2.1
COL6A5A8TX70 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC1.93□□□□□ -2.1
COL6A5A8TX70 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC1.93□□□□□ -2.1
COL6A5A8TX70 DYNLL1P5-201ENST00000467158 270 ntBASIC1.93□□□□□ -2.1
COL6A5A8TX70 SNORA31.1-201ENST00000515993 133 ntBASIC1.93□□□□□ -2.1
COL6A5A8TX70 SNORA31.5-201ENST00000516190 133 ntBASIC1.93□□□□□ -2.1
COL6A5A8TX70 RNU6-295P-201ENST00000516901 104 ntBASIC1.93□□□□□ -2.1
COL6A5A8TX70 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC1.93□□□□□ -2.1
COL6A5A8TX70 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC1.93□□□□□ -2.1
COL6A5A8TX70 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC1.93□□□□□ -2.1
COL6A5A8TX70 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC1.93□□□□□ -2.1
COL6A5A8TX70 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC1.93□□□□□ -2.1
COL6A5A8TX70 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC1.93□□□□□ -2.1
COL6A5A8TX70 AC087565.3-202ENST00000642085 1603 ntBASIC1.93□□□□□ -2.1
COL6A5A8TX70 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC1.93□□□□□ -2.1
COL6A5A8TX70 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC1.93□□□□□ -2.1
COL6A5A8TX70 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC1.93□□□□□ -2.1
COL6A5A8TX70 AL139276.1-201ENST00000311910 1001 ntBASIC1.93□□□□□ -2.1
COL6A5A8TX70 Y_RNA.251-201ENST00000364551 99 ntBASIC1.93□□□□□ -2.1
COL6A5A8TX70 SKINT1L-201ENST00000401057 817 ntBASIC1.93□□□□□ -2.1
COL6A5A8TX70 RPL23AP48-201ENST00000406913 488 ntBASIC1.93□□□□□ -2.1
COL6A5A8TX70 CR769767.1-201ENST00000436337 346 ntBASIC1.93□□□□□ -2.1
COL6A5A8TX70 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC1.93□□□□□ -2.1
COL6A5A8TX70 OR5H3P-201ENST00000502817 919 ntBASIC1.93□□□□□ -2.1
COL6A5A8TX70 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC1.93□□□□□ -2.1
COL6A5A8TX70 SNRPGP18-201ENST00000553000 214 ntBASIC1.93□□□□□ -2.1
COL6A5A8TX70 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC1.93□□□□□ -2.1
COL6A5A8TX70 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC1.93□□□□□ -2.1
COL6A5A8TX70 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC1.93□□□□□ -2.1
COL6A5A8TX70 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC1.93□□□□□ -2.1
COL6A5A8TX70 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC1.93□□□□□ -2.1
COL6A5A8TX70 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC1.93□□□□□ -2.1
COL6A5A8TX70 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
COL6A5A8TX70 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
COL6A5A8TX70 PWAR6-201ENST00000552334 4618 ntBASIC1.92□□□□□ -2.1
COL6A5A8TX70 LSM5-205ENST00000409952 687 ntTSL 4 BASIC1.92□□□□□ -2.1
COL6A5A8TX70 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC1.92□□□□□ -2.1
COL6A5A8TX70 AC009238.1-201ENST00000442165 424 ntBASIC1.92□□□□□ -2.1
COL6A5A8TX70 ELOCP13-201ENST00000443934 329 ntBASIC1.92□□□□□ -2.1
COL6A5A8TX70 AC009237.6-201ENST00000446969 424 ntBASIC1.92□□□□□ -2.1
COL6A5A8TX70 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
COL6A5A8TX70 AC126121.1-201ENST00000482313 553 ntBASIC1.92□□□□□ -2.1
COL6A5A8TX70 RPL23AP49-201ENST00000492925 468 ntBASIC1.92□□□□□ -2.1
COL6A5A8TX70 AC126177.3-201ENST00000551839 688 ntBASIC1.92□□□□□ -2.1
COL6A5A8TX70 AL731537.2-201ENST00000561565 951 ntBASIC1.92□□□□□ -2.1
COL6A5A8TX70 AC005046.1-201ENST00000608515 625 ntBASIC1.92□□□□□ -2.1
COL6A5A8TX70 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
COL6A5A8TX70 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC1.92□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 83.7 ms