Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC6.27□□□□□ -1.41
CCDC9Q9Y3X0 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
CCDC9Q9Y3X0 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC6.27□□□□□ -1.41
CCDC9Q9Y3X0 AL157700.1-201ENST00000561973 1432 ntBASIC6.27□□□□□ -1.41
CCDC9Q9Y3X0 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC6.27□□□□□ -1.41
CCDC9Q9Y3X0 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC6.27□□□□□ -1.41
CCDC9Q9Y3X0 MIR208A-201ENST00000362287 71 ntBASIC6.27□□□□□ -1.41
CCDC9Q9Y3X0 RNU6-525P-201ENST00000363685 104 ntBASIC6.27□□□□□ -1.41
CCDC9Q9Y3X0 RNA5SP167-201ENST00000365461 116 ntBASIC6.27□□□□□ -1.41
CCDC9Q9Y3X0 RNU6-1074P-201ENST00000383995 104 ntBASIC6.27□□□□□ -1.41
CCDC9Q9Y3X0 AL022722.2-201ENST00000402519 180 ntBASIC6.27□□□□□ -1.41
CCDC9Q9Y3X0 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC6.27□□□□□ -1.41
CCDC9Q9Y3X0 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC6.27□□□□□ -1.41
CCDC9Q9Y3X0 AL645608.4-201ENST00000423619 154 ntBASIC6.27□□□□□ -1.41
CCDC9Q9Y3X0 MTCO3P5-201ENST00000433620 714 ntBASIC6.27□□□□□ -1.41
CCDC9Q9Y3X0 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC6.27□□□□□ -1.41
CCDC9Q9Y3X0 HSFY6P-201ENST00000445573 403 ntBASIC6.27□□□□□ -1.41
CCDC9Q9Y3X0 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC6.27□□□□□ -1.41
CCDC9Q9Y3X0 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC6.27□□□□□ -1.41
CCDC9Q9Y3X0 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC6.27□□□□□ -1.41
CCDC9Q9Y3X0 RPL5P32-201ENST00000454085 879 ntBASIC6.27□□□□□ -1.41
CCDC9Q9Y3X0 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC6.27□□□□□ -1.41
CCDC9Q9Y3X0 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC6.27□□□□□ -1.41
CCDC9Q9Y3X0 RN7SL810P-201ENST00000493031 276 ntBASIC6.27□□□□□ -1.41
CCDC9Q9Y3X0 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC6.27□□□□□ -1.41
CCDC9Q9Y3X0 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC6.27□□□□□ -1.41
CCDC9Q9Y3X0 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC6.27□□□□□ -1.41
CCDC9Q9Y3X0 RNU6-201P-201ENST00000517100 61 ntBASIC6.27□□□□□ -1.41
CCDC9Q9Y3X0 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC6.27□□□□□ -1.41
CCDC9Q9Y3X0 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC6.27□□□□□ -1.41
CCDC9Q9Y3X0 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC6.27□□□□□ -1.41
CCDC9Q9Y3X0 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC6.27□□□□□ -1.41
CCDC9Q9Y3X0 AC233280.2-201ENST00000603917 1070 ntBASIC6.27□□□□□ -1.41
CCDC9Q9Y3X0 AC011468.4-201ENST00000603942 409 ntBASIC6.27□□□□□ -1.41
CCDC9Q9Y3X0 AL158211.4-201ENST00000606988 584 ntBASIC6.27□□□□□ -1.41
CCDC9Q9Y3X0 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC6.27□□□□□ -1.41
CCDC9Q9Y3X0 AL603839.4-201ENST00000624658 1005 ntBASIC6.27□□□□□ -1.41
CCDC9Q9Y3X0 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC6.27□□□□□ -1.41
CCDC9Q9Y3X0 AC138649.5-201ENST00000637456 137 ntBASIC6.27□□□□□ -1.41
CCDC9Q9Y3X0 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC6.27□□□□□ -1.41
CCDC9Q9Y3X0 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC6.27□□□□□ -1.41
CCDC9Q9Y3X0 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC6.27□□□□□ -1.41
CCDC9Q9Y3X0 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
CCDC9Q9Y3X0 ALB-202ENST00000401494 1659 ntTSL 5 BASIC6.26□□□□□ -1.41
CCDC9Q9Y3X0 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC6.26□□□□□ -1.41
CCDC9Q9Y3X0 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
CCDC9Q9Y3X0 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC6.26□□□□□ -1.41
CCDC9Q9Y3X0 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC6.26□□□□□ -1.41
CCDC9Q9Y3X0 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC6.26□□□□□ -1.41
CCDC9Q9Y3X0 RNA5SP241-201ENST00000391326 114 ntBASIC6.26□□□□□ -1.41
CCDC9Q9Y3X0 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC6.26□□□□□ -1.41
CCDC9Q9Y3X0 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC6.26□□□□□ -1.41
CCDC9Q9Y3X0 AC233728.2-201ENST00000425348 757 ntBASIC6.26□□□□□ -1.41
CCDC9Q9Y3X0 BX276092.6-201ENST00000430476 250 ntBASIC6.26□□□□□ -1.41
CCDC9Q9Y3X0 FTH1P6-201ENST00000430768 320 ntBASIC6.26□□□□□ -1.41
CCDC9Q9Y3X0 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC6.26□□□□□ -1.41
CCDC9Q9Y3X0 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC6.26□□□□□ -1.41
CCDC9Q9Y3X0 RPL21P112-201ENST00000434403 463 ntBASIC6.26□□□□□ -1.41
CCDC9Q9Y3X0 AC092641.1-201ENST00000440229 772 ntBASIC6.26□□□□□ -1.41
CCDC9Q9Y3X0 BX276092.8-201ENST00000455722 250 ntBASIC6.26□□□□□ -1.41
CCDC9Q9Y3X0 AP000873.1-201ENST00000463987 400 ntBASIC6.26□□□□□ -1.41
CCDC9Q9Y3X0 AC010285.1-201ENST00000470580 392 ntBASIC6.26□□□□□ -1.41
CCDC9Q9Y3X0 AC104763.1-201ENST00000475274 360 ntBASIC6.26□□□□□ -1.41
CCDC9Q9Y3X0 AC078918.1-201ENST00000498515 228 ntBASIC6.26□□□□□ -1.41
CCDC9Q9Y3X0 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC6.26□□□□□ -1.41
CCDC9Q9Y3X0 AC079140.3-201ENST00000511111 550 ntBASIC6.26□□□□□ -1.41
CCDC9Q9Y3X0 RNA5SP360-201ENST00000516555 118 ntBASIC6.26□□□□□ -1.41
CCDC9Q9Y3X0 OR5M7P-201ENST00000526140 972 ntBASIC6.26□□□□□ -1.41
CCDC9Q9Y3X0 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC6.26□□□□□ -1.41
CCDC9Q9Y3X0 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC6.26□□□□□ -1.41
CCDC9Q9Y3X0 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC6.26□□□□□ -1.41
CCDC9Q9Y3X0 RFPL1S-203ENST00000539579 330 ntBASIC6.26□□□□□ -1.41
CCDC9Q9Y3X0 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC6.26□□□□□ -1.41
CCDC9Q9Y3X0 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC6.26□□□□□ -1.41
CCDC9Q9Y3X0 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC6.26□□□□□ -1.41
CCDC9Q9Y3X0 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC6.26□□□□□ -1.41
CCDC9Q9Y3X0 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC6.26□□□□□ -1.41
CCDC9Q9Y3X0 MIR7853-201ENST00000584820 132 ntBASIC6.26□□□□□ -1.41
CCDC9Q9Y3X0 AC103591.3-201ENST00000608684 209 ntBASIC6.26□□□□□ -1.41
CCDC9Q9Y3X0 AC009268.2-201ENST00000621925 457 ntBASIC6.26□□□□□ -1.41
CCDC9Q9Y3X0 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC6.26□□□□□ -1.41
CCDC9Q9Y3X0 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
CCDC9Q9Y3X0 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
CCDC9Q9Y3X0 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC6.26□□□□□ -1.41
CCDC9Q9Y3X0 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC6.26□□□□□ -1.41
CCDC9Q9Y3X0 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC6.26□□□□□ -1.41
CCDC9Q9Y3X0 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC9Q9Y3X0 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
CCDC9Q9Y3X0 SALL4P2-201ENST00000423288 2910 ntBASIC6.25□□□□□ -1.41
CCDC9Q9Y3X0 SNORA7.2-201ENST00000364446 145 ntBASIC6.25□□□□□ -1.41
CCDC9Q9Y3X0 RNA5SP239-201ENST00000410218 129 ntBASIC6.25□□□□□ -1.41
CCDC9Q9Y3X0 AC007899.1-201ENST00000412776 775 ntBASIC6.25□□□□□ -1.41
CCDC9Q9Y3X0 CDK8P2-201ENST00000415020 547 ntBASIC6.25□□□□□ -1.41
CCDC9Q9Y3X0 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC6.25□□□□□ -1.41
CCDC9Q9Y3X0 OR4K11P-201ENST00000431829 904 ntBASIC6.25□□□□□ -1.41
CCDC9Q9Y3X0 RPEP2-201ENST00000432149 701 ntBASIC6.25□□□□□ -1.41
CCDC9Q9Y3X0 SNORD42A-201ENST00000459584 64 ntBASIC6.25□□□□□ -1.41
CCDC9Q9Y3X0 OR9M1P-201ENST00000459641 921 ntBASIC6.25□□□□□ -1.41
CCDC9Q9Y3X0 ACTR3P3-201ENST00000480448 893 ntBASIC6.25□□□□□ -1.41
CCDC9Q9Y3X0 UBE2Q2P9-201ENST00000490086 202 ntBASIC6.25□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 118.4 ms