Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 SSXP9-201ENST00000417503 292 ntBASIC3.28□□□□□ -1.88
FOXA2Q9Y261 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC3.28□□□□□ -1.88
FOXA2Q9Y261 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
FOXA2Q9Y261 NEK4P1-201ENST00000433383 879 ntBASIC3.28□□□□□ -1.88
FOXA2Q9Y261 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC3.28□□□□□ -1.88
FOXA2Q9Y261 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.28□□□□□ -1.88
FOXA2Q9Y261 COX7BP2-201ENST00000437976 242 ntBASIC3.28□□□□□ -1.88
FOXA2Q9Y261 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC3.28□□□□□ -1.88
FOXA2Q9Y261 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC3.28□□□□□ -1.88
FOXA2Q9Y261 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.28□□□□□ -1.88
FOXA2Q9Y261 AC234775.1-201ENST00000454247 670 ntBASIC3.28□□□□□ -1.88
FOXA2Q9Y261 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
FOXA2Q9Y261 RPL7P9-201ENST00000468715 747 ntBASIC3.28□□□□□ -1.88
FOXA2Q9Y261 AC010618.1-201ENST00000469924 477 ntBASIC3.28□□□□□ -1.88
FOXA2Q9Y261 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC3.28□□□□□ -1.88
FOXA2Q9Y261 RPS27AP1-201ENST00000475545 471 ntBASIC3.28□□□□□ -1.88
FOXA2Q9Y261 RPL7P18-201ENST00000478965 734 ntBASIC3.28□□□□□ -1.88
FOXA2Q9Y261 RPS27AP13-201ENST00000498403 237 ntBASIC3.28□□□□□ -1.88
FOXA2Q9Y261 CBX3P3-201ENST00000508108 532 ntBASIC3.28□□□□□ -1.88
FOXA2Q9Y261 AC093824.1-201ENST00000508796 343 ntBASIC3.28□□□□□ -1.88
FOXA2Q9Y261 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC3.28□□□□□ -1.88
FOXA2Q9Y261 FABP5P12-201ENST00000515543 389 ntBASIC3.28□□□□□ -1.88
FOXA2Q9Y261 RN7SKP122-201ENST00000515923 296 ntBASIC3.28□□□□□ -1.88
FOXA2Q9Y261 SNORA31.9-201ENST00000516429 84 ntBASIC3.28□□□□□ -1.88
FOXA2Q9Y261 MRPL49P2-201ENST00000521066 465 ntBASIC3.28□□□□□ -1.88
FOXA2Q9Y261 MTND1P6-201ENST00000523621 946 ntBASIC3.28□□□□□ -1.88
FOXA2Q9Y261 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.28□□□□□ -1.88
FOXA2Q9Y261 NBEAP1-201ENST00000554452 979 ntBASIC3.28□□□□□ -1.88
FOXA2Q9Y261 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC3.28□□□□□ -1.88
FOXA2Q9Y261 MED28P6-201ENST00000558776 231 ntBASIC3.28□□□□□ -1.88
FOXA2Q9Y261 AL360157.1-201ENST00000565962 87 ntBASIC3.28□□□□□ -1.88
FOXA2Q9Y261 AC022968.1-201ENST00000567372 442 ntBASIC3.28□□□□□ -1.88
FOXA2Q9Y261 COX6CP3-201ENST00000580869 223 ntBASIC3.28□□□□□ -1.88
FOXA2Q9Y261 AC069366.1-201ENST00000583159 838 ntBASIC3.28□□□□□ -1.88
FOXA2Q9Y261 AC114878.2-201ENST00000604863 1251 ntBASIC3.28□□□□□ -1.88
FOXA2Q9Y261 AC106900.2-201ENST00000604994 317 ntBASIC3.28□□□□□ -1.88
FOXA2Q9Y261 AC027449.1-201ENST00000608890 407 ntBASIC3.28□□□□□ -1.88
FOXA2Q9Y261 AL390240.1-201ENST00000612950 384 ntBASIC3.28□□□□□ -1.88
FOXA2Q9Y261 AC006213.4-201ENST00000616184 634 ntBASIC3.28□□□□□ -1.88
FOXA2Q9Y261 AL445567.2-201ENST00000618935 498 ntBASIC3.28□□□□□ -1.88
FOXA2Q9Y261 XIST_intron.1-201ENST00000619444 68 ntBASIC3.28□□□□□ -1.88
FOXA2Q9Y261 PLCE1P1-201ENST00000622094 305 ntBASIC3.28□□□□□ -1.88
FOXA2Q9Y261 AL078595.3-201ENST00000623815 1166 ntBASIC3.28□□□□□ -1.88
FOXA2Q9Y261 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
FOXA2Q9Y261 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.28□□□□□ -1.88
FOXA2Q9Y261 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
FOXA2Q9Y261 IPO8P1-201ENST00000455509 3109 ntBASIC3.28□□□□□ -1.88
FOXA2Q9Y261 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC3.28□□□□□ -1.89
FOXA2Q9Y261 AL136164.4-201ENST00000625013 2135 ntBASIC3.28□□□□□ -1.89
FOXA2Q9Y261 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC3.28□□□□□ -1.89
FOXA2Q9Y261 AC116667.1-201ENST00000604855 2072 ntBASIC3.28□□□□□ -1.89
FOXA2Q9Y261 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
FOXA2Q9Y261 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC3.27□□□□□ -1.89
FOXA2Q9Y261 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
FOXA2Q9Y261 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
FOXA2Q9Y261 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
FOXA2Q9Y261 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
FOXA2Q9Y261 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
FOXA2Q9Y261 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
FOXA2Q9Y261 SNORA60-201ENST00000362396 134 ntBASIC3.27□□□□□ -1.89
FOXA2Q9Y261 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
FOXA2Q9Y261 MIR135A2-201ENST00000384854 100 ntBASIC3.27□□□□□ -1.89
FOXA2Q9Y261 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
FOXA2Q9Y261 RNU6-952P-201ENST00000391164 108 ntBASIC3.27□□□□□ -1.89
FOXA2Q9Y261 RPS26P8-201ENST00000393490 348 ntBASIC3.27□□□□□ -1.89
FOXA2Q9Y261 RNU2-43P-201ENST00000410306 190 ntBASIC3.27□□□□□ -1.89
FOXA2Q9Y261 RN7SKP56-201ENST00000410513 331 ntBASIC3.27□□□□□ -1.89
FOXA2Q9Y261 RPL21P32-201ENST00000419877 477 ntBASIC3.27□□□□□ -1.89
FOXA2Q9Y261 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC3.27□□□□□ -1.89
FOXA2Q9Y261 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
FOXA2Q9Y261 AL953862.1-201ENST00000423016 168 ntBASIC3.27□□□□□ -1.89
FOXA2Q9Y261 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC3.27□□□□□ -1.89
FOXA2Q9Y261 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC3.27□□□□□ -1.89
FOXA2Q9Y261 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC3.27□□□□□ -1.89
FOXA2Q9Y261 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.27□□□□□ -1.89
FOXA2Q9Y261 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC3.27□□□□□ -1.89
FOXA2Q9Y261 MTCYBP31-201ENST00000438855 1122 ntBASIC3.27□□□□□ -1.89
FOXA2Q9Y261 MTND3P1-201ENST00000441336 220 ntBASIC3.27□□□□□ -1.89
FOXA2Q9Y261 AC006011.1-201ENST00000442758 349 ntBASIC3.27□□□□□ -1.89
FOXA2Q9Y261 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC3.27□□□□□ -1.89
FOXA2Q9Y261 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC3.27□□□□□ -1.89
FOXA2Q9Y261 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC3.27□□□□□ -1.89
FOXA2Q9Y261 MEMO1P3-201ENST00000459811 302 ntBASIC3.27□□□□□ -1.89
FOXA2Q9Y261 AC092754.2-201ENST00000463506 460 ntBASIC3.27□□□□□ -1.89
FOXA2Q9Y261 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC3.27□□□□□ -1.89
FOXA2Q9Y261 RN7SL604P-201ENST00000492589 296 ntBASIC3.27□□□□□ -1.89
FOXA2Q9Y261 THAP6-203ENST00000502620 582 ntTSL 3 BASIC3.27□□□□□ -1.89
FOXA2Q9Y261 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
FOXA2Q9Y261 VN1R104P-201ENST00000505115 1009 ntBASIC3.27□□□□□ -1.89
FOXA2Q9Y261 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
FOXA2Q9Y261 IGKV2-23-201ENST00000518729 323 ntBASIC3.27□□□□□ -1.89
FOXA2Q9Y261 AC103783.1-201ENST00000520506 373 ntBASIC3.27□□□□□ -1.89
FOXA2Q9Y261 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC3.27□□□□□ -1.89
FOXA2Q9Y261 HIGD1AP10-201ENST00000527837 282 ntBASIC3.27□□□□□ -1.89
FOXA2Q9Y261 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC3.27□□□□□ -1.89
FOXA2Q9Y261 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC3.27□□□□□ -1.89
FOXA2Q9Y261 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC3.27□□□□□ -1.89
FOXA2Q9Y261 AC006518.1-201ENST00000541449 943 ntBASIC3.27□□□□□ -1.89
FOXA2Q9Y261 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC3.27□□□□□ -1.89
FOXA2Q9Y261 OR6C7P-201ENST00000547875 934 ntBASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 144.7 ms