Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 OR5AN2P-201ENST00000534535 896 ntBASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 AC010546.1-201ENST00000569391 485 ntBASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 AC108479.2-201ENST00000617314 601 ntBASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 AC027290.2-201ENST00000623210 18662 ntBASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 CARF-208ENST00000428585 2513 ntTSL 2 BASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 OR11H5P-202ENST00000641612 1325 ntBASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 MARK2P15-201ENST00000432204 2186 ntBASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.91□□□□□ -1.62
LIMCH1Q9UPQ0 AC006378.2-201ENST00000623178 2476 ntBASIC4.9□□□□□ -1.62
LIMCH1Q9UPQ0 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.9□□□□□ -1.62
LIMCH1Q9UPQ0 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
LIMCH1Q9UPQ0 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC4.9□□□□□ -1.62
LIMCH1Q9UPQ0 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
LIMCH1Q9UPQ0 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
LIMCH1Q9UPQ0 AC012618.3-205ENST00000637896 1496 ntBASIC4.9□□□□□ -1.62
LIMCH1Q9UPQ0 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
LIMCH1Q9UPQ0 RNY4P24-201ENST00000362735 96 ntBASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 Y_RNA.97-201ENST00000363094 102 ntBASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 RNA5SP447-201ENST00000363749 119 ntBASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 U8.14-201ENST00000390843 143 ntBASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 AL031679.1-201ENST00000400616 525 ntBASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 DHFRP6-201ENST00000401776 268 ntBASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 BTBD10P2-201ENST00000404779 676 ntBASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 SNORA3C-201ENST00000408792 125 ntBASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 JKAMPP1-201ENST00000413804 919 ntBASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 RPL31P2-201ENST00000413849 377 ntBASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 ELOCP17-201ENST00000414751 326 ntBASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 Z97055.1-201ENST00000419730 712 ntBASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 AC109583.1-201ENST00000432156 268 ntBASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 SKP1P1-201ENST00000438081 489 ntBASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 LSM1P1-201ENST00000438629 273 ntBASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 SNORD42A-201ENST00000459584 64 ntBASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 PABPC1P3-201ENST00000469174 459 ntBASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 HMGB1P21-201ENST00000502313 581 ntBASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 AC093824.1-201ENST00000508796 343 ntBASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 AC008958.1-201ENST00000511047 682 ntBASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 KCTD9P2-201ENST00000512203 1013 ntBASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 MTND1P5-201ENST00000517906 940 ntBASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 DUXAP2-201ENST00000519198 589 ntBASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 COX6CP8-201ENST00000522620 226 ntBASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 AP003392.2-201ENST00000527269 208 ntBASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 OR5AP1P-201ENST00000529730 940 ntBASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 AC013828.2-201ENST00000532487 235 ntBASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 PDCD5P1-201ENST00000543528 309 ntBASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 DYNLL1P4-201ENST00000549314 266 ntBASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 ZNF519P3-201ENST00000557158 1032 ntBASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 AP001180.3-201ENST00000582221 145 ntBASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 MIR548AB-201ENST00000584917 84 ntBASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 AP003465.2-201ENST00000602571 373 ntBASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 AC091805.2-201ENST00000603848 235 ntBASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 AL021997.1-201ENST00000605757 193 ntBASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 AL139089.1-201ENST00000620372 975 ntBASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 LDHAL6CP-202ENST00000550738 3224 ntBASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 AC092447.7-201ENST00000422212 1621 ntBASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
LIMCH1Q9UPQ0 AL022578.1-201ENST00000439330 1433 ntBASIC4.89□□□□□ -1.63
LIMCH1Q9UPQ0 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.89□□□□□ -1.63
LIMCH1Q9UPQ0 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
LIMCH1Q9UPQ0 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.89□□□□□ -1.63
LIMCH1Q9UPQ0 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
LIMCH1Q9UPQ0 RNA5-8SP7-201ENST00000363443 155 ntBASIC4.89□□□□□ -1.63
LIMCH1Q9UPQ0 RNU1-132P-201ENST00000364300 164 ntBASIC4.89□□□□□ -1.63
LIMCH1Q9UPQ0 RNU6-1215P-201ENST00000384441 102 ntBASIC4.89□□□□□ -1.63
LIMCH1Q9UPQ0 AC136624.1-201ENST00000400791 413 ntBASIC4.89□□□□□ -1.63
LIMCH1Q9UPQ0 RNA5SP39-201ENST00000411245 120 ntBASIC4.89□□□□□ -1.63
LIMCH1Q9UPQ0 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC4.89□□□□□ -1.63
LIMCH1Q9UPQ0 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC4.89□□□□□ -1.63
LIMCH1Q9UPQ0 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC4.89□□□□□ -1.63
LIMCH1Q9UPQ0 HSPE1P28-201ENST00000443139 211 ntBASIC4.89□□□□□ -1.63
LIMCH1Q9UPQ0 RPL7P31-201ENST00000450192 724 ntBASIC4.89□□□□□ -1.63
LIMCH1Q9UPQ0 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC4.89□□□□□ -1.63
LIMCH1Q9UPQ0 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC4.89□□□□□ -1.63
LIMCH1Q9UPQ0 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC4.89□□□□□ -1.63
LIMCH1Q9UPQ0 AC011825.1-201ENST00000484967 388 ntBASIC4.89□□□□□ -1.63
LIMCH1Q9UPQ0 RPS26P15-201ENST00000488067 348 ntBASIC4.89□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 116.3 ms