Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 RN7SKP56-201ENST00000410513 331 ntBASIC4.32□□□□□ -1.72
VPS4AQ9UN37 RNA5SP104-201ENST00000410989 118 ntBASIC4.32□□□□□ -1.72
VPS4AQ9UN37 AF274854.1-201ENST00000413236 615 ntBASIC4.32□□□□□ -1.72
VPS4AQ9UN37 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
VPS4AQ9UN37 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC4.32□□□□□ -1.72
VPS4AQ9UN37 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC4.32□□□□□ -1.72
VPS4AQ9UN37 NUP35P2-201ENST00000416748 943 ntBASIC4.32□□□□□ -1.72
VPS4AQ9UN37 RPL21P32-201ENST00000419877 477 ntBASIC4.32□□□□□ -1.72
VPS4AQ9UN37 RPL30P3-201ENST00000424262 333 ntBASIC4.32□□□□□ -1.72
VPS4AQ9UN37 COX6CP15-201ENST00000426313 211 ntBASIC4.32□□□□□ -1.72
VPS4AQ9UN37 AL451062.2-201ENST00000427515 271 ntBASIC4.32□□□□□ -1.72
VPS4AQ9UN37 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC4.32□□□□□ -1.72
VPS4AQ9UN37 Z74696.2-201ENST00000436514 498 ntBASIC4.32□□□□□ -1.72
VPS4AQ9UN37 RPL23AP74-201ENST00000437246 471 ntBASIC4.32□□□□□ -1.72
VPS4AQ9UN37 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC4.32□□□□□ -1.72
VPS4AQ9UN37 Z95327.1-201ENST00000446082 482 ntBASIC4.32□□□□□ -1.72
VPS4AQ9UN37 DNAJC19P1-201ENST00000455312 319 ntBASIC4.32□□□□□ -1.72
VPS4AQ9UN37 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC4.32□□□□□ -1.72
VPS4AQ9UN37 SUMO2P2-201ENST00000456482 255 ntBASIC4.32□□□□□ -1.72
VPS4AQ9UN37 SNORA84-201ENST00000459229 133 ntBASIC4.32□□□□□ -1.72
VPS4AQ9UN37 AC034236.1-201ENST00000469891 373 ntBASIC4.32□□□□□ -1.72
VPS4AQ9UN37 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC4.32□□□□□ -1.72
VPS4AQ9UN37 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC4.32□□□□□ -1.72
VPS4AQ9UN37 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC4.32□□□□□ -1.72
VPS4AQ9UN37 AC110792.2-201ENST00000510278 224 ntBASIC4.32□□□□□ -1.72
VPS4AQ9UN37 CDC42P4-201ENST00000510507 563 ntBASIC4.32□□□□□ -1.72
VPS4AQ9UN37 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC4.32□□□□□ -1.72
VPS4AQ9UN37 AC116347.2-201ENST00000514912 523 ntBASIC4.32□□□□□ -1.72
VPS4AQ9UN37 RNA5SP154-201ENST00000516193 111 ntBASIC4.32□□□□□ -1.72
VPS4AQ9UN37 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC4.32□□□□□ -1.72
VPS4AQ9UN37 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
VPS4AQ9UN37 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC4.32□□□□□ -1.72
VPS4AQ9UN37 ZDHHC20P3-201ENST00000531576 336 ntBASIC4.32□□□□□ -1.72
VPS4AQ9UN37 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC4.32□□□□□ -1.72
VPS4AQ9UN37 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC4.32□□□□□ -1.72
VPS4AQ9UN37 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
VPS4AQ9UN37 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC4.32□□□□□ -1.72
VPS4AQ9UN37 AC084783.1-201ENST00000565846 910 ntBASIC4.32□□□□□ -1.72
VPS4AQ9UN37 AC010546.1-201ENST00000569391 485 ntBASIC4.32□□□□□ -1.72
VPS4AQ9UN37 AP003465.2-201ENST00000602571 373 ntBASIC4.32□□□□□ -1.72
VPS4AQ9UN37 AC068790.5-201ENST00000602741 355 ntBASIC4.32□□□□□ -1.72
VPS4AQ9UN37 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC4.32□□□□□ -1.72
VPS4AQ9UN37 AL445264.1-201ENST00000621719 171 ntBASIC4.32□□□□□ -1.72
VPS4AQ9UN37 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
VPS4AQ9UN37 TEX41-256ENST00000626411 368 ntTSL 5 BASIC4.32□□□□□ -1.72
VPS4AQ9UN37 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
VPS4AQ9UN37 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.32□□□□□ -1.72
VPS4AQ9UN37 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
VPS4AQ9UN37 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC4.32□□□□□ -1.72
VPS4AQ9UN37 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.32□□□□□ -1.72
VPS4AQ9UN37 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC4.32□□□□□ -1.72
VPS4AQ9UN37 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC4.32□□□□□ -1.72
VPS4AQ9UN37 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
VPS4AQ9UN37 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
VPS4AQ9UN37 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC4.31□□□□□ -1.72
VPS4AQ9UN37 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC4.31□□□□□ -1.72
VPS4AQ9UN37 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.31□□□□□ -1.72
VPS4AQ9UN37 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
VPS4AQ9UN37 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC4.31□□□□□ -1.72
VPS4AQ9UN37 Y_RNA.3-201ENST00000362331 103 ntBASIC4.31□□□□□ -1.72
VPS4AQ9UN37 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
VPS4AQ9UN37 RNU1-44P-201ENST00000384453 163 ntBASIC4.31□□□□□ -1.72
VPS4AQ9UN37 Y_RNA.517-201ENST00000384551 106 ntBASIC4.31□□□□□ -1.72
VPS4AQ9UN37 AL603766.1-201ENST00000407763 664 ntBASIC4.31□□□□□ -1.72
VPS4AQ9UN37 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC4.31□□□□□ -1.72
VPS4AQ9UN37 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC4.31□□□□□ -1.72
VPS4AQ9UN37 AC069218.2-201ENST00000411665 344 ntBASIC4.31□□□□□ -1.72
VPS4AQ9UN37 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC4.31□□□□□ -1.72
VPS4AQ9UN37 CYP4F29P-201ENST00000420685 446 ntBASIC4.31□□□□□ -1.72
VPS4AQ9UN37 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC4.31□□□□□ -1.72
VPS4AQ9UN37 AL445669.1-201ENST00000426743 755 ntBASIC4.31□□□□□ -1.72
VPS4AQ9UN37 OR4F13P-201ENST00000428478 931 ntBASIC4.31□□□□□ -1.72
VPS4AQ9UN37 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC4.31□□□□□ -1.72
VPS4AQ9UN37 RSU1P2-202ENST00000437884 485 ntBASIC4.31□□□□□ -1.72
VPS4AQ9UN37 NUTF2P3-201ENST00000448540 384 ntBASIC4.31□□□□□ -1.72
VPS4AQ9UN37 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC4.31□□□□□ -1.72
VPS4AQ9UN37 SNORD42A-201ENST00000459584 64 ntBASIC4.31□□□□□ -1.72
VPS4AQ9UN37 RN7SL303P-201ENST00000469773 251 ntBASIC4.31□□□□□ -1.72
VPS4AQ9UN37 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC4.31□□□□□ -1.72
VPS4AQ9UN37 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
VPS4AQ9UN37 AC096751.1-202ENST00000502691 1067 ntBASIC4.31□□□□□ -1.72
VPS4AQ9UN37 AC022447.3-201ENST00000506865 495 ntBASIC4.31□□□□□ -1.72
VPS4AQ9UN37 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC4.31□□□□□ -1.72
VPS4AQ9UN37 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC4.31□□□□□ -1.72
VPS4AQ9UN37 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
VPS4AQ9UN37 MTND5P4-201ENST00000514978 288 ntBASIC4.31□□□□□ -1.72
VPS4AQ9UN37 AP001781.1-201ENST00000530977 207 ntBASIC4.31□□□□□ -1.72
VPS4AQ9UN37 AL139174.1-201ENST00000531489 886 ntBASIC4.31□□□□□ -1.72
VPS4AQ9UN37 AC100770.1-201ENST00000532310 322 ntBASIC4.31□□□□□ -1.72
VPS4AQ9UN37 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC4.31□□□□□ -1.72
VPS4AQ9UN37 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC4.31□□□□□ -1.72
VPS4AQ9UN37 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC4.31□□□□□ -1.72
VPS4AQ9UN37 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC4.31□□□□□ -1.72
VPS4AQ9UN37 AP001094.1-201ENST00000579805 193 ntBASIC4.31□□□□□ -1.72
VPS4AQ9UN37 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC4.31□□□□□ -1.72
VPS4AQ9UN37 MIR544B-201ENST00000582372 78 ntBASIC4.31□□□□□ -1.72
VPS4AQ9UN37 MIR4307-201ENST00000582802 84 ntBASIC4.31□□□□□ -1.72
VPS4AQ9UN37 MAGOH2P-202ENST00000584384 429 ntBASIC4.31□□□□□ -1.72
VPS4AQ9UN37 MIR548AB-201ENST00000584917 84 ntBASIC4.31□□□□□ -1.72
VPS4AQ9UN37 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC4.31□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 433.2 ms