Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 ST13P14-201ENST00000474095 734 ntBASIC4.06□□□□□ -1.76
VPS28Q9UK41 RN7SL132P-201ENST00000478131 296 ntBASIC4.06□□□□□ -1.76
VPS28Q9UK41 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
VPS28Q9UK41 PPIAP15-201ENST00000479662 484 ntBASIC4.06□□□□□ -1.76
VPS28Q9UK41 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC4.06□□□□□ -1.76
VPS28Q9UK41 AC091951.3-201ENST00000504093 246 ntBASIC4.06□□□□□ -1.76
VPS28Q9UK41 COX7A2P2-201ENST00000505291 250 ntBASIC4.06□□□□□ -1.76
VPS28Q9UK41 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC4.06□□□□□ -1.76
VPS28Q9UK41 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC4.06□□□□□ -1.76
VPS28Q9UK41 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC4.06□□□□□ -1.76
VPS28Q9UK41 MTND4LP31-201ENST00000514859 294 ntBASIC4.06□□□□□ -1.76
VPS28Q9UK41 MIR2114-201ENST00000516645 80 ntBASIC4.06□□□□□ -1.76
VPS28Q9UK41 IGKV3OR22-2-201ENST00000517943 313 ntBASIC4.06□□□□□ -1.76
VPS28Q9UK41 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC4.06□□□□□ -1.76
VPS28Q9UK41 DEFB131D-201ENST00000526803 184 ntBASIC4.06□□□□□ -1.76
VPS28Q9UK41 AC018630.1-201ENST00000541376 925 ntBASIC4.06□□□□□ -1.76
VPS28Q9UK41 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC4.06□□□□□ -1.76
VPS28Q9UK41 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC4.06□□□□□ -1.76
VPS28Q9UK41 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC4.06□□□□□ -1.76
VPS28Q9UK41 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC4.06□□□□□ -1.76
VPS28Q9UK41 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC4.06□□□□□ -1.76
VPS28Q9UK41 AC022968.1-201ENST00000567372 442 ntBASIC4.06□□□□□ -1.76
VPS28Q9UK41 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC4.06□□□□□ -1.76
VPS28Q9UK41 RN7SL703P-201ENST00000578485 302 ntBASIC4.06□□□□□ -1.76
VPS28Q9UK41 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC4.06□□□□□ -1.76
VPS28Q9UK41 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC4.06□□□□□ -1.76
VPS28Q9UK41 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC4.06□□□□□ -1.76
VPS28Q9UK41 AC012669.1-201ENST00000603209 283 ntBASIC4.06□□□□□ -1.76
VPS28Q9UK41 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC4.06□□□□□ -1.76
VPS28Q9UK41 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC4.06□□□□□ -1.76
VPS28Q9UK41 AL773545.4-201ENST00000637262 310 ntBASIC4.06□□□□□ -1.76
VPS28Q9UK41 AL513478.4-201ENST00000641636 310 ntBASIC4.06□□□□□ -1.76
VPS28Q9UK41 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC4.06□□□□□ -1.76
VPS28Q9UK41 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
VPS28Q9UK41 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC4.06□□□□□ -1.76
VPS28Q9UK41 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
VPS28Q9UK41 AP001486.2-201ENST00000561652 5113 ntBASIC4.06□□□□□ -1.76
VPS28Q9UK41 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
VPS28Q9UK41 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
VPS28Q9UK41 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC4.05□□□□□ -1.76
VPS28Q9UK41 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
VPS28Q9UK41 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
VPS28Q9UK41 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
VPS28Q9UK41 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
VPS28Q9UK41 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
VPS28Q9UK41 AL031679.1-201ENST00000400616 525 ntBASIC4.05□□□□□ -1.76
VPS28Q9UK41 MOB4-205ENST00000409916 829 ntTSL 3 BASIC4.05□□□□□ -1.76
VPS28Q9UK41 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC4.05□□□□□ -1.76
VPS28Q9UK41 CRYBB2P1-203ENST00000415709 538 ntBASIC4.05□□□□□ -1.76
VPS28Q9UK41 MTCO2P5-201ENST00000422621 426 ntBASIC4.05□□□□□ -1.76
VPS28Q9UK41 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC4.05□□□□□ -1.76
VPS28Q9UK41 RPL7P28-201ENST00000437739 740 ntBASIC4.05□□□□□ -1.76
VPS28Q9UK41 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
VPS28Q9UK41 Z73417.1-201ENST00000447373 778 ntBASIC4.05□□□□□ -1.76
VPS28Q9UK41 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC4.05□□□□□ -1.76
VPS28Q9UK41 VN1R40P-201ENST00000455196 941 ntBASIC4.05□□□□□ -1.76
VPS28Q9UK41 AP001992.1-205ENST00000462248 379 ntBASIC4.05□□□□□ -1.76
VPS28Q9UK41 RPS4XP10-201ENST00000465034 731 ntBASIC4.05□□□□□ -1.76
VPS28Q9UK41 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC4.05□□□□□ -1.76
VPS28Q9UK41 AL024509.2-201ENST00000493462 493 ntBASIC4.05□□□□□ -1.76
VPS28Q9UK41 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC4.05□□□□□ -1.76
VPS28Q9UK41 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC4.05□□□□□ -1.76
VPS28Q9UK41 AC021146.8-201ENST00000507455 733 ntBASIC4.05□□□□□ -1.76
VPS28Q9UK41 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC4.05□□□□□ -1.76
VPS28Q9UK41 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC4.05□□□□□ -1.76
VPS28Q9UK41 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC4.05□□□□□ -1.76
VPS28Q9UK41 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC4.05□□□□□ -1.76
VPS28Q9UK41 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
VPS28Q9UK41 PTS-202ENST00000524931 696 ntTSL 3 BASIC4.05□□□□□ -1.76
VPS28Q9UK41 AC011853.2-201ENST00000526901 774 ntTSL 5 BASIC4.05□□□□□ -1.76
VPS28Q9UK41 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC4.05□□□□□ -1.76
VPS28Q9UK41 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC4.05□□□□□ -1.76
VPS28Q9UK41 AC023050.2-201ENST00000544968 387 ntBASIC4.05□□□□□ -1.76
VPS28Q9UK41 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC4.05□□□□□ -1.76
VPS28Q9UK41 SETP7-201ENST00000552169 453 ntBASIC4.05□□□□□ -1.76
VPS28Q9UK41 MTND1P24-201ENST00000552175 861 ntBASIC4.05□□□□□ -1.76
VPS28Q9UK41 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC4.05□□□□□ -1.76
VPS28Q9UK41 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
VPS28Q9UK41 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC4.05□□□□□ -1.76
VPS28Q9UK41 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC4.05□□□□□ -1.76
VPS28Q9UK41 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC4.05□□□□□ -1.76
VPS28Q9UK41 AL591424.2-201ENST00000617023 128 ntBASIC4.05□□□□□ -1.76
VPS28Q9UK41 CCT7-217ENST00000626868 249 ntTSL 5 BASIC4.05□□□□□ -1.76
VPS28Q9UK41 TEX41-265ENST00000627785 704 ntTSL 5 BASIC4.05□□□□□ -1.76
VPS28Q9UK41 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC4.05□□□□□ -1.76
VPS28Q9UK41 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC4.05□□□□□ -1.76
VPS28Q9UK41 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC4.05□□□□□ -1.76
VPS28Q9UK41 OR4G11P-202ENST00000642116 1414 ntBASIC4.04□□□□□ -1.76
VPS28Q9UK41 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC4.04□□□□□ -1.76
VPS28Q9UK41 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC4.04□□□□□ -1.76
VPS28Q9UK41 RNU6-83P-201ENST00000384568 112 ntBASIC4.04□□□□□ -1.76
VPS28Q9UK41 AL445189.1-201ENST00000405722 338 ntBASIC4.04□□□□□ -1.76
VPS28Q9UK41 SNX10-203ENST00000409367 746 ntTSL 5 BASIC4.04□□□□□ -1.76
VPS28Q9UK41 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
VPS28Q9UK41 Z97055.1-201ENST00000419730 712 ntBASIC4.04□□□□□ -1.76
VPS28Q9UK41 AC007742.1-201ENST00000425789 329 ntBASIC4.04□□□□□ -1.76
VPS28Q9UK41 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC4.04□□□□□ -1.76
VPS28Q9UK41 ELOCP26-201ENST00000436067 329 ntBASIC4.04□□□□□ -1.76
VPS28Q9UK41 MUPP-201ENST00000438111 566 ntBASIC4.04□□□□□ -1.76
VPS28Q9UK41 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC4.04□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 89.8 ms