Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 RNA5SP309-201ENST00000516670 106 ntBASIC3.46□□□□□ -1.86
LHX3Q9UBR4 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC3.46□□□□□ -1.86
LHX3Q9UBR4 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC3.46□□□□□ -1.86
LHX3Q9UBR4 AC090502.2-201ENST00000549267 280 ntBASIC3.46□□□□□ -1.86
LHX3Q9UBR4 AC005476.1-201ENST00000554427 397 ntBASIC3.46□□□□□ -1.86
LHX3Q9UBR4 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC3.46□□□□□ -1.86
LHX3Q9UBR4 AC141257.3-201ENST00000572906 215 ntBASIC3.46□□□□□ -1.86
LHX3Q9UBR4 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC3.46□□□□□ -1.86
LHX3Q9UBR4 AC024220.1-201ENST00000603675 484 ntBASIC3.46□□□□□ -1.86
LHX3Q9UBR4 AC069431.2-201ENST00000604149 1099 ntBASIC3.46□□□□□ -1.86
LHX3Q9UBR4 AC092953.2-201ENST00000608000 699 ntBASIC3.46□□□□□ -1.86
LHX3Q9UBR4 AL121652.1-201ENST00000608851 448 ntBASIC3.46□□□□□ -1.86
LHX3Q9UBR4 AC073968.1-201ENST00000618594 637 ntBASIC3.46□□□□□ -1.86
LHX3Q9UBR4 OR1S1-201ENST00000624470 978 ntBASIC3.46□□□□□ -1.86
LHX3Q9UBR4 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC3.46□□□□□ -1.86
LHX3Q9UBR4 AL445984.1-201ENST00000637834 659 ntBASIC3.46□□□□□ -1.86
LHX3Q9UBR4 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.46□□□□□ -1.86
LHX3Q9UBR4 AC095050.2-201ENST00000510748 1458 ntBASIC3.46□□□□□ -1.86
LHX3Q9UBR4 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
LHX3Q9UBR4 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.46□□□□□ -1.86
LHX3Q9UBR4 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.45□□□□□ -1.86
LHX3Q9UBR4 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC3.45□□□□□ -1.86
LHX3Q9UBR4 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
LHX3Q9UBR4 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC3.45□□□□□ -1.86
LHX3Q9UBR4 AL513302.2-201ENST00000562313 1842 ntBASIC3.45□□□□□ -1.86
LHX3Q9UBR4 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
LHX3Q9UBR4 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
LHX3Q9UBR4 SNORA31-201ENST00000362607 130 ntBASIC3.45□□□□□ -1.86
LHX3Q9UBR4 RNU4-51P-201ENST00000364206 140 ntBASIC3.45□□□□□ -1.86
LHX3Q9UBR4 RNU6-335P-201ENST00000364563 113 ntBASIC3.45□□□□□ -1.86
LHX3Q9UBR4 RNU6-761P-201ENST00000384148 107 ntBASIC3.45□□□□□ -1.86
LHX3Q9UBR4 SNORA51.6-201ENST00000384151 125 ntBASIC3.45□□□□□ -1.86
LHX3Q9UBR4 AL024474.1-201ENST00000404655 591 ntBASIC3.45□□□□□ -1.86
LHX3Q9UBR4 RNU2-28P-201ENST00000410457 189 ntBASIC3.45□□□□□ -1.86
LHX3Q9UBR4 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.45□□□□□ -1.86
LHX3Q9UBR4 BX323014.1-201ENST00000412876 237 ntBASIC3.45□□□□□ -1.86
LHX3Q9UBR4 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC3.45□□□□□ -1.86
LHX3Q9UBR4 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC3.45□□□□□ -1.86
LHX3Q9UBR4 OR4K6P-201ENST00000416478 897 ntBASIC3.45□□□□□ -1.86
LHX3Q9UBR4 AL449283.1-202ENST00000418249 604 ntBASIC3.45□□□□□ -1.86
LHX3Q9UBR4 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC3.45□□□□□ -1.86
LHX3Q9UBR4 AL451062.2-201ENST00000427515 271 ntBASIC3.45□□□□□ -1.86
LHX3Q9UBR4 GTF2IP7-202ENST00000436677 309 ntBASIC3.45□□□□□ -1.86
LHX3Q9UBR4 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC3.45□□□□□ -1.86
LHX3Q9UBR4 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC3.45□□□□□ -1.86
LHX3Q9UBR4 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.45□□□□□ -1.86
LHX3Q9UBR4 PRELID3BP6-201ENST00000503839 571 ntBASIC3.45□□□□□ -1.86
LHX3Q9UBR4 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
LHX3Q9UBR4 FCF1P8-201ENST00000510322 597 ntBASIC3.45□□□□□ -1.86
LHX3Q9UBR4 MIR2114-201ENST00000516645 80 ntBASIC3.45□□□□□ -1.86
LHX3Q9UBR4 SNORA70.19-201ENST00000516717 90 ntBASIC3.45□□□□□ -1.86
LHX3Q9UBR4 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC3.45□□□□□ -1.86
LHX3Q9UBR4 AC027309.2-201ENST00000520566 192 ntBASIC3.45□□□□□ -1.86
LHX3Q9UBR4 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC3.45□□□□□ -1.86
LHX3Q9UBR4 AC092851.1-201ENST00000535964 478 ntBASIC3.45□□□□□ -1.86
LHX3Q9UBR4 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC3.45□□□□□ -1.86
LHX3Q9UBR4 AC025917.1-201ENST00000562062 612 ntTSL 3 BASIC3.45□□□□□ -1.86
LHX3Q9UBR4 MIR3912-201ENST00000577566 105 ntBASIC3.45□□□□□ -1.86
LHX3Q9UBR4 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.45□□□□□ -1.86
LHX3Q9UBR4 AC091946.2-201ENST00000606105 291 ntBASIC3.45□□□□□ -1.86
LHX3Q9UBR4 AL391834.2-201ENST00000609982 546 ntBASIC3.45□□□□□ -1.86
LHX3Q9UBR4 PART1_2.1-201ENST00000612397 250 ntBASIC3.45□□□□□ -1.86
LHX3Q9UBR4 AC009318.4-201ENST00000620496 486 ntBASIC3.45□□□□□ -1.86
LHX3Q9UBR4 AC004777.1-201ENST00000624317 287 ntBASIC3.45□□□□□ -1.86
LHX3Q9UBR4 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
LHX3Q9UBR4 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC3.45□□□□□ -1.86
LHX3Q9UBR4 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.45□□□□□ -1.86
LHX3Q9UBR4 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.45□□□□□ -1.86
LHX3Q9UBR4 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.44□□□□□ -1.86
LHX3Q9UBR4 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
LHX3Q9UBR4 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
LHX3Q9UBR4 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
LHX3Q9UBR4 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC3.44□□□□□ -1.86
LHX3Q9UBR4 AP005901.5-201ENST00000545779 1796 ntBASIC3.44□□□□□ -1.86
LHX3Q9UBR4 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
LHX3Q9UBR4 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
LHX3Q9UBR4 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
LHX3Q9UBR4 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
LHX3Q9UBR4 MIR122-201ENST00000385044 85 ntBASIC3.44□□□□□ -1.86
LHX3Q9UBR4 RPL31P1-201ENST00000398116 372 ntBASIC3.44□□□□□ -1.86
LHX3Q9UBR4 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC3.44□□□□□ -1.86
LHX3Q9UBR4 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
LHX3Q9UBR4 FNDC3CP-201ENST00000420795 1155 ntBASIC3.44□□□□□ -1.86
LHX3Q9UBR4 AC006548.1-201ENST00000427470 102 ntBASIC3.44□□□□□ -1.86
LHX3Q9UBR4 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC3.44□□□□□ -1.86
LHX3Q9UBR4 RPL21P112-201ENST00000434403 463 ntBASIC3.44□□□□□ -1.86
LHX3Q9UBR4 AC127537.2-201ENST00000439258 465 ntBASIC3.44□□□□□ -1.86
LHX3Q9UBR4 MTCO1P53-201ENST00000441633 699 ntBASIC3.44□□□□□ -1.86
LHX3Q9UBR4 AL358794.1-201ENST00000445689 381 ntBASIC3.44□□□□□ -1.86
LHX3Q9UBR4 snoU109.3-201ENST00000459477 145 ntBASIC3.44□□□□□ -1.86
LHX3Q9UBR4 PLGLA-201ENST00000465668 449 ntBASIC3.44□□□□□ -1.86
LHX3Q9UBR4 PABPC1P3-201ENST00000469174 459 ntBASIC3.44□□□□□ -1.86
LHX3Q9UBR4 RPL21P13-201ENST00000488305 481 ntBASIC3.44□□□□□ -1.86
LHX3Q9UBR4 AC108078.3-201ENST00000502633 489 ntBASIC3.44□□□□□ -1.86
LHX3Q9UBR4 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.44□□□□□ -1.86
LHX3Q9UBR4 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC3.44□□□□□ -1.86
LHX3Q9UBR4 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.44□□□□□ -1.86
LHX3Q9UBR4 AC011853.2-201ENST00000526901 774 ntTSL 5 BASIC3.44□□□□□ -1.86
LHX3Q9UBR4 RFPL1S-203ENST00000539579 330 ntBASIC3.44□□□□□ -1.86
LHX3Q9UBR4 ZKSCAN7P1-201ENST00000543668 673 ntBASIC3.44□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 75.7 ms