Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 METTL21EP-201ENST00000298105 713 ntBASIC3.13□□□□□ -1.91
CDX2Q99626 MIR423-201ENST00000362201 94 ntBASIC3.13□□□□□ -1.91
CDX2Q99626 RNU6-859P-201ENST00000362728 107 ntBASIC3.13□□□□□ -1.91
CDX2Q99626 RNU6-252P-201ENST00000363232 107 ntBASIC3.13□□□□□ -1.91
CDX2Q99626 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
CDX2Q99626 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
CDX2Q99626 RNU6-98P-201ENST00000384173 107 ntBASIC3.13□□□□□ -1.91
CDX2Q99626 AL353692.2-201ENST00000407054 335 ntBASIC3.13□□□□□ -1.91
CDX2Q99626 RN7SKP192-201ENST00000411291 327 ntBASIC3.13□□□□□ -1.91
CDX2Q99626 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC3.13□□□□□ -1.91
CDX2Q99626 AL031736.2-201ENST00000426573 787 ntBASIC3.13□□□□□ -1.91
CDX2Q99626 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC3.13□□□□□ -1.91
CDX2Q99626 ELOCP6-201ENST00000429066 328 ntBASIC3.13□□□□□ -1.91
CDX2Q99626 ARF4P2-201ENST00000430209 526 ntBASIC3.13□□□□□ -1.91
CDX2Q99626 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC3.13□□□□□ -1.91
CDX2Q99626 B3GNT2P1-201ENST00000434960 952 ntBASIC3.13□□□□□ -1.91
CDX2Q99626 CST9LP2-201ENST00000437612 320 ntBASIC3.13□□□□□ -1.91
CDX2Q99626 TPMTP4-201ENST00000450749 678 ntBASIC3.13□□□□□ -1.91
CDX2Q99626 ELOCP12-201ENST00000458706 328 ntBASIC3.13□□□□□ -1.91
CDX2Q99626 HESX1-202ENST00000473921 757 ntTSL 5 BASIC3.13□□□□□ -1.91
CDX2Q99626 AC025181.1-201ENST00000477507 416 ntBASIC3.13□□□□□ -1.91
CDX2Q99626 AL049830.2-201ENST00000480072 201 ntBASIC3.13□□□□□ -1.91
CDX2Q99626 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.13□□□□□ -1.91
CDX2Q99626 RPS3AP50-201ENST00000487064 803 ntBASIC3.13□□□□□ -1.91
CDX2Q99626 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC3.13□□□□□ -1.91
CDX2Q99626 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC3.13□□□□□ -1.91
CDX2Q99626 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC3.13□□□□□ -1.91
CDX2Q99626 AC006445.2-201ENST00000510061 472 ntBASIC3.13□□□□□ -1.91
CDX2Q99626 OR5H4P-201ENST00000510851 923 ntBASIC3.13□□□□□ -1.91
CDX2Q99626 SNORA31.13-201ENST00000516624 135 ntBASIC3.13□□□□□ -1.91
CDX2Q99626 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC3.13□□□□□ -1.91
CDX2Q99626 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC3.13□□□□□ -1.91
CDX2Q99626 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC3.13□□□□□ -1.91
CDX2Q99626 AC115085.1-201ENST00000588924 229 ntBASIC3.13□□□□□ -1.91
CDX2Q99626 AC110792.4-201ENST00000609843 298 ntBASIC3.13□□□□□ -1.91
CDX2Q99626 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.13□□□□□ -1.91
CDX2Q99626 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC3.13□□□□□ -1.91
CDX2Q99626 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.13□□□□□ -1.91
CDX2Q99626 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
CDX2Q99626 ZNF72P-201ENST00000425869 1908 ntBASIC3.13□□□□□ -1.91
CDX2Q99626 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.12□□□□□ -1.91
CDX2Q99626 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
CDX2Q99626 AP001148.1-201ENST00000624124 2359 ntBASIC3.12□□□□□ -1.91
CDX2Q99626 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
CDX2Q99626 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.12□□□□□ -1.91
CDX2Q99626 AC096644.4-201ENST00000563417 2912 ntBASIC3.12□□□□□ -1.91
CDX2Q99626 SNORD115-48-201ENST00000364764 76 ntBASIC3.12□□□□□ -1.91
CDX2Q99626 HNRNPDLP1-201ENST00000412834 550 ntBASIC3.12□□□□□ -1.91
CDX2Q99626 RPL31P45-201ENST00000419532 356 ntBASIC3.12□□□□□ -1.91
CDX2Q99626 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.12□□□□□ -1.91
CDX2Q99626 AL049610.1-201ENST00000423374 372 ntBASIC3.12□□□□□ -1.91
CDX2Q99626 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC3.12□□□□□ -1.91
CDX2Q99626 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC3.12□□□□□ -1.91
CDX2Q99626 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC3.12□□□□□ -1.91
CDX2Q99626 RPS4XP2-201ENST00000458402 793 ntBASIC3.12□□□□□ -1.91
CDX2Q99626 CABYRP1-201ENST00000465493 1045 ntBASIC3.12□□□□□ -1.91
CDX2Q99626 AC010307.1-201ENST00000467206 836 ntBASIC3.12□□□□□ -1.91
CDX2Q99626 AC078817.1-201ENST00000492623 435 ntBASIC3.12□□□□□ -1.91
CDX2Q99626 RNA5SP148-201ENST00000516527 94 ntBASIC3.12□□□□□ -1.91
CDX2Q99626 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
CDX2Q99626 AC107016.2-201ENST00000547968 190 ntBASIC3.12□□□□□ -1.91
CDX2Q99626 OR4U1P-201ENST00000554958 912 ntBASIC3.12□□□□□ -1.91
CDX2Q99626 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC3.12□□□□□ -1.91
CDX2Q99626 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC3.12□□□□□ -1.91
CDX2Q99626 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
CDX2Q99626 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
CDX2Q99626 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC3.12□□□□□ -1.91
CDX2Q99626 AC244205.2-202ENST00000635781 342 ntBASIC3.12□□□□□ -1.91
CDX2Q99626 MIR4278-201ENST00000636094 69 ntBASIC3.12□□□□□ -1.91
CDX2Q99626 AC241585.2-209ENST00000638217 143 ntBASIC3.12□□□□□ -1.91
CDX2Q99626 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
CDX2Q99626 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
CDX2Q99626 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
CDX2Q99626 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
CDX2Q99626 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
CDX2Q99626 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
CDX2Q99626 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC3.11□□□□□ -1.91
CDX2Q99626 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.11□□□□□ -1.91
CDX2Q99626 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.11□□□□□ -1.91
CDX2Q99626 Y_RNA.4-201ENST00000362333 112 ntBASIC3.11□□□□□ -1.91
CDX2Q99626 OR51F1-201ENST00000380383 960 ntAPPRIS P5 BASIC3.11□□□□□ -1.91
CDX2Q99626 RNU6-883P-201ENST00000384597 107 ntBASIC3.11□□□□□ -1.91
CDX2Q99626 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
CDX2Q99626 AC110754.1-201ENST00000399740 601 ntBASIC3.11□□□□□ -1.91
CDX2Q99626 RHEBP3-201ENST00000411920 351 ntBASIC3.11□□□□□ -1.91
CDX2Q99626 AC007390.1-201ENST00000415722 356 ntBASIC3.11□□□□□ -1.91
CDX2Q99626 MTCO3P4-201ENST00000419236 787 ntBASIC3.11□□□□□ -1.91
CDX2Q99626 ARL2BPP3-201ENST00000421226 480 ntBASIC3.11□□□□□ -1.91
CDX2Q99626 ETF1P3-201ENST00000430422 1160 ntBASIC3.11□□□□□ -1.91
CDX2Q99626 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
CDX2Q99626 AC093663.2-201ENST00000484625 313 ntBASIC3.11□□□□□ -1.91
CDX2Q99626 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC3.11□□□□□ -1.91
CDX2Q99626 NRG1-IT1-201ENST00000520444 758 ntTSL 3 BASIC3.11□□□□□ -1.91
CDX2Q99626 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC3.11□□□□□ -1.91
CDX2Q99626 HIGD1AP10-201ENST00000527837 282 ntBASIC3.11□□□□□ -1.91
CDX2Q99626 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC3.11□□□□□ -1.91
CDX2Q99626 AL133457.1-201ENST00000564251 987 ntBASIC3.11□□□□□ -1.91
CDX2Q99626 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.11□□□□□ -1.91
CDX2Q99626 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC3.11□□□□□ -1.91
CDX2Q99626 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 107.7 ms