Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AL133271.1-201ENST00000538229 291 ntBASIC2.33□□□□□ -2.04
VPS13AQ96RL7 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
VPS13AQ96RL7 AC093831.2-201ENST00000624393 3427 ntBASIC2.32□□□□□ -2.04
VPS13AQ96RL7 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC2.32□□□□□ -2.04
VPS13AQ96RL7 RNA5SP456-201ENST00000364002 114 ntBASIC2.32□□□□□ -2.04
VPS13AQ96RL7 LAP3P1-201ENST00000403648 294 ntBASIC2.32□□□□□ -2.04
VPS13AQ96RL7 AL583834.1-201ENST00000406943 343 ntBASIC2.32□□□□□ -2.04
VPS13AQ96RL7 RPS12P5-201ENST00000423449 371 ntBASIC2.32□□□□□ -2.04
VPS13AQ96RL7 AC004866.2-201ENST00000438285 481 ntBASIC2.32□□□□□ -2.04
VPS13AQ96RL7 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC2.32□□□□□ -2.04
VPS13AQ96RL7 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC2.32□□□□□ -2.04
VPS13AQ96RL7 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.32□□□□□ -2.04
VPS13AQ96RL7 RN7SKP96-201ENST00000516948 297 ntBASIC2.32□□□□□ -2.04
VPS13AQ96RL7 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC2.32□□□□□ -2.04
VPS13AQ96RL7 CR589904.2-201ENST00000612533 440 ntBASIC2.32□□□□□ -2.04
VPS13AQ96RL7 AC011460.1-201ENST00000636268 1834 ntBASIC2.32□□□□□ -2.04
VPS13AQ96RL7 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
VPS13AQ96RL7 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
VPS13AQ96RL7 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC2.32□□□□□ -2.04
VPS13AQ96RL7 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.32□□□□□ -2.04
VPS13AQ96RL7 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC2.32□□□□□ -2.04
VPS13AQ96RL7 AC128657.1-201ENST00000549459 145 ntBASIC2.32□□□□□ -2.04
VPS13AQ96RL7 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC2.32□□□□□ -2.04
VPS13AQ96RL7 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC2.32□□□□□ -2.04
VPS13AQ96RL7 AL591516.1-201ENST00000611326 274 ntBASIC2.32□□□□□ -2.04
VPS13AQ96RL7 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC2.32□□□□□ -2.04
VPS13AQ96RL7 AC090229.1-201ENST00000590983 1609 ntBASIC2.32□□□□□ -2.04
VPS13AQ96RL7 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
VPS13AQ96RL7 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
VPS13AQ96RL7 AL139156.1-201ENST00000412785 841 ntBASIC2.31□□□□□ -2.04
VPS13AQ96RL7 Z98742.2-201ENST00000431564 187 ntBASIC2.31□□□□□ -2.04
VPS13AQ96RL7 AL451074.3-201ENST00000437709 472 ntBASIC2.31□□□□□ -2.04
VPS13AQ96RL7 AC104389.3-201ENST00000445629 235 ntBASIC2.31□□□□□ -2.04
VPS13AQ96RL7 OR4T1P-201ENST00000554933 911 ntBASIC2.31□□□□□ -2.04
VPS13AQ96RL7 AC016542.2-201ENST00000624201 619 ntBASIC2.31□□□□□ -2.04
VPS13AQ96RL7 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
VPS13AQ96RL7 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
VPS13AQ96RL7 RNU4-44P-201ENST00000363050 141 ntBASIC2.31□□□□□ -2.04
VPS13AQ96RL7 RNU6-805P-201ENST00000365643 106 ntBASIC2.31□□□□□ -2.04
VPS13AQ96RL7 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC2.31□□□□□ -2.04
VPS13AQ96RL7 TRMT112P2-201ENST00000512910 132 ntBASIC2.31□□□□□ -2.04
VPS13AQ96RL7 HSPE1P18-201ENST00000517602 280 ntBASIC2.31□□□□□ -2.04
VPS13AQ96RL7 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC2.31□□□□□ -2.04
VPS13AQ96RL7 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC2.31□□□□□ -2.04
VPS13AQ96RL7 PHKBP1-201ENST00000450951 1951 ntBASIC2.31□□□□□ -2.04
VPS13AQ96RL7 MIR1276-201ENST00000408707 83 ntBASIC2.31□□□□□ -2.04
VPS13AQ96RL7 KCTD9P5-201ENST00000504141 1170 ntBASIC2.31□□□□□ -2.04
VPS13AQ96RL7 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC2.31□□□□□ -2.04
VPS13AQ96RL7 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC2.31□□□□□ -2.04
VPS13AQ96RL7 CRYM-AS1-204ENST00000637983 556 ntBASIC2.31□□□□□ -2.04
VPS13AQ96RL7 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC2.3□□□□□ -2.04
VPS13AQ96RL7 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
VPS13AQ96RL7 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
VPS13AQ96RL7 RNU1-75P-201ENST00000347264 129 ntBASIC2.3□□□□□ -2.04
VPS13AQ96RL7 MIR337-201ENST00000362281 93 ntBASIC2.3□□□□□ -2.04
VPS13AQ96RL7 OR51F1-201ENST00000380383 960 ntAPPRIS P5 BASIC2.3□□□□□ -2.04
VPS13AQ96RL7 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC2.3□□□□□ -2.04
VPS13AQ96RL7 SNORA67.3-201ENST00000384366 140 ntBASIC2.3□□□□□ -2.04
VPS13AQ96RL7 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
VPS13AQ96RL7 AC011753.1-201ENST00000451001 220 ntBASIC2.3□□□□□ -2.04
VPS13AQ96RL7 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC2.3□□□□□ -2.04
VPS13AQ96RL7 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC2.3□□□□□ -2.04
VPS13AQ96RL7 AL355836.1-201ENST00000555951 870 ntBASIC2.3□□□□□ -2.04
VPS13AQ96RL7 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC2.3□□□□□ -2.04
VPS13AQ96RL7 AC008121.2-201ENST00000614647 523 ntBASIC2.3□□□□□ -2.04
VPS13AQ96RL7 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC2.3□□□□□ -2.04
VPS13AQ96RL7 YWHAEP7-203ENST00000622054 312 ntBASIC2.3□□□□□ -2.04
VPS13AQ96RL7 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.3□□□□□ -2.04
VPS13AQ96RL7 SNORD114-26-201ENST00000363543 72 ntBASIC2.3□□□□□ -2.04
VPS13AQ96RL7 ATP5J2P3-201ENST00000451550 258 ntBASIC2.3□□□□□ -2.04
VPS13AQ96RL7 VN1R17P-201ENST00000472048 1090 ntBASIC2.3□□□□□ -2.04
VPS13AQ96RL7 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC2.3□□□□□ -2.04
VPS13AQ96RL7 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC2.3□□□□□ -2.04
VPS13AQ96RL7 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC2.3□□□□□ -2.04
VPS13AQ96RL7 MIR3605-201ENST00000583214 100 ntBASIC2.3□□□□□ -2.04
VPS13AQ96RL7 AL589994.2-201ENST00000621124 579 ntBASIC2.3□□□□□ -2.04
VPS13AQ96RL7 OR5M3-201ENST00000312240 1051 ntAPPRIS P1 BASIC2.29□□□□□ -2.04
VPS13AQ96RL7 AL138878.1-201ENST00000405131 347 ntBASIC2.29□□□□□ -2.04
VPS13AQ96RL7 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC2.29□□□□□ -2.04
VPS13AQ96RL7 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC2.29□□□□□ -2.04
VPS13AQ96RL7 AP004217.1-201ENST00000480579 346 ntBASIC2.29□□□□□ -2.04
VPS13AQ96RL7 NDUFA5P6-201ENST00000542110 379 ntBASIC2.29□□□□□ -2.04
VPS13AQ96RL7 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC2.29□□□□□ -2.04
VPS13AQ96RL7 U7.8-201ENST00000619968 63 ntBASIC2.29□□□□□ -2.04
VPS13AQ96RL7 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.29□□□□□ -2.04
VPS13AQ96RL7 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
VPS13AQ96RL7 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.29□□□□□ -2.04
VPS13AQ96RL7 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
VPS13AQ96RL7 AL139276.1-201ENST00000311910 1001 ntBASIC2.29□□□□□ -2.04
VPS13AQ96RL7 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
VPS13AQ96RL7 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC2.29□□□□□ -2.04
VPS13AQ96RL7 AP1B1P2-201ENST00000416196 106 ntBASIC2.29□□□□□ -2.04
VPS13AQ96RL7 GTF2IP23-201ENST00000423746 351 ntBASIC2.29□□□□□ -2.04
VPS13AQ96RL7 MTCO3P21-201ENST00000430791 643 ntBASIC2.29□□□□□ -2.04
VPS13AQ96RL7 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC2.29□□□□□ -2.04
VPS13AQ96RL7 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC2.29□□□□□ -2.04
VPS13AQ96RL7 SNRPGP18-201ENST00000553000 214 ntBASIC2.29□□□□□ -2.04
VPS13AQ96RL7 AC005046.1-201ENST00000608515 625 ntBASIC2.29□□□□□ -2.04
VPS13AQ96RL7 AC002064.3-201ENST00000623448 346 ntBASIC2.29□□□□□ -2.04
VPS13AQ96RL7 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC2.29□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 90.9 ms