Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 SETP14-201ENST00000497538 873 ntBASIC3.53□□□□□ -1.84
VPS39Q96JC1 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
VPS39Q96JC1 KLHL2P1-201ENST00000508691 521 ntBASIC3.53□□□□□ -1.84
VPS39Q96JC1 AC010265.1-201ENST00000513509 211 ntBASIC3.53□□□□□ -1.84
VPS39Q96JC1 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC3.53□□□□□ -1.84
VPS39Q96JC1 SNORA70.19-201ENST00000516717 90 ntBASIC3.53□□□□□ -1.84
VPS39Q96JC1 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.53□□□□□ -1.84
VPS39Q96JC1 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC3.53□□□□□ -1.84
VPS39Q96JC1 AC022690.1-201ENST00000526681 550 ntBASIC3.53□□□□□ -1.84
VPS39Q96JC1 OR4P1P-201ENST00000530808 1136 ntBASIC3.53□□□□□ -1.84
VPS39Q96JC1 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC3.53□□□□□ -1.84
VPS39Q96JC1 CYB5AP5-201ENST00000549779 389 ntBASIC3.53□□□□□ -1.84
VPS39Q96JC1 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC3.53□□□□□ -1.84
VPS39Q96JC1 BNIP3P5-201ENST00000562290 498 ntBASIC3.53□□□□□ -1.84
VPS39Q96JC1 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC3.53□□□□□ -1.84
VPS39Q96JC1 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC3.53□□□□□ -1.84
VPS39Q96JC1 AL365503.1-201ENST00000605247 905 ntBASIC3.53□□□□□ -1.84
VPS39Q96JC1 AC008962.1-201ENST00000605729 304 ntBASIC3.53□□□□□ -1.84
VPS39Q96JC1 AC018926.1-201ENST00000616335 435 ntBASIC3.53□□□□□ -1.84
VPS39Q96JC1 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC3.53□□□□□ -1.84
VPS39Q96JC1 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.53□□□□□ -1.84
VPS39Q96JC1 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.53□□□□□ -1.84
VPS39Q96JC1 DBF4P1-201ENST00000412976 1892 ntBASIC3.53□□□□□ -1.84
VPS39Q96JC1 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
VPS39Q96JC1 AC110774.1-201ENST00000623567 2018 ntBASIC3.53□□□□□ -1.84
VPS39Q96JC1 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.85
VPS39Q96JC1 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.85
VPS39Q96JC1 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.53□□□□□ -1.85
VPS39Q96JC1 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
VPS39Q96JC1 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.52□□□□□ -1.85
VPS39Q96JC1 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
VPS39Q96JC1 OR5H2-201ENST00000355273 945 ntBASIC3.52□□□□□ -1.85
VPS39Q96JC1 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
VPS39Q96JC1 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
VPS39Q96JC1 RNU6-251P-201ENST00000363235 104 ntBASIC3.52□□□□□ -1.85
VPS39Q96JC1 RNU5B-1-201ENST00000363286 116 ntBASIC3.52□□□□□ -1.85
VPS39Q96JC1 RNU6-353P-201ENST00000364266 108 ntBASIC3.52□□□□□ -1.85
VPS39Q96JC1 U8.11-201ENST00000384699 133 ntBASIC3.52□□□□□ -1.85
VPS39Q96JC1 U8.12-201ENST00000384701 133 ntBASIC3.52□□□□□ -1.85
VPS39Q96JC1 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
VPS39Q96JC1 RN7SKP285-201ENST00000410137 318 ntBASIC3.52□□□□□ -1.85
VPS39Q96JC1 AL024507.1-201ENST00000412741 274 ntBASIC3.52□□□□□ -1.85
VPS39Q96JC1 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
VPS39Q96JC1 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC3.52□□□□□ -1.85
VPS39Q96JC1 RPL21P40-201ENST00000428586 483 ntBASIC3.52□□□□□ -1.85
VPS39Q96JC1 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC3.52□□□□□ -1.85
VPS39Q96JC1 ZNF736P11Y-201ENST00000442535 1213 ntBASIC3.52□□□□□ -1.85
VPS39Q96JC1 ZNF736P12Y-201ENST00000443152 1243 ntBASIC3.52□□□□□ -1.85
VPS39Q96JC1 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
VPS39Q96JC1 RPS3AP46-201ENST00000448352 682 ntBASIC3.52□□□□□ -1.85
VPS39Q96JC1 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC3.52□□□□□ -1.85
VPS39Q96JC1 ZNF736P4Y-201ENST00000454995 1243 ntBASIC3.52□□□□□ -1.85
VPS39Q96JC1 RPL23AP31-201ENST00000456160 467 ntBASIC3.52□□□□□ -1.85
VPS39Q96JC1 U8.18-201ENST00000459285 133 ntBASIC3.52□□□□□ -1.85
VPS39Q96JC1 PLGLA-201ENST00000465668 449 ntBASIC3.52□□□□□ -1.85
VPS39Q96JC1 XACT-201ENST00000468762 497 ntTSL 5 BASIC3.52□□□□□ -1.85
VPS39Q96JC1 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC3.52□□□□□ -1.85
VPS39Q96JC1 AP000563.1-201ENST00000490865 758 ntBASIC3.52□□□□□ -1.85
VPS39Q96JC1 AC020893.1-201ENST00000502452 580 ntBASIC3.52□□□□□ -1.85
VPS39Q96JC1 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.52□□□□□ -1.85
VPS39Q96JC1 NDUFB9P3-201ENST00000521269 501 ntBASIC3.52□□□□□ -1.85
VPS39Q96JC1 ERHP1-201ENST00000523006 310 ntBASIC3.52□□□□□ -1.85
VPS39Q96JC1 AP003102.1-201ENST00000525638 661 ntBASIC3.52□□□□□ -1.85
VPS39Q96JC1 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC3.52□□□□□ -1.85
VPS39Q96JC1 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC3.52□□□□□ -1.85
VPS39Q96JC1 CFL2-206ENST00000556161 546 ntTSL 4 BASIC3.52□□□□□ -1.85
VPS39Q96JC1 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC3.52□□□□□ -1.85
VPS39Q96JC1 AC093519.1-201ENST00000566109 298 ntBASIC3.52□□□□□ -1.85
VPS39Q96JC1 AC090618.1-201ENST00000571972 585 ntTSL 2 BASIC3.52□□□□□ -1.85
VPS39Q96JC1 AC011492.1-201ENST00000600023 315 ntBASIC3.52□□□□□ -1.85
VPS39Q96JC1 AC124312.4-201ENST00000605533 310 ntBASIC3.52□□□□□ -1.85
VPS39Q96JC1 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC3.52□□□□□ -1.85
VPS39Q96JC1 AC110801.1-201ENST00000623590 212 ntBASIC3.52□□□□□ -1.85
VPS39Q96JC1 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC3.52□□□□□ -1.85
VPS39Q96JC1 AC119674.1-207ENST00000641355 633 ntBASIC3.52□□□□□ -1.85
VPS39Q96JC1 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC3.52□□□□□ -1.85
VPS39Q96JC1 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
VPS39Q96JC1 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
VPS39Q96JC1 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
VPS39Q96JC1 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
VPS39Q96JC1 MAPK10-362ENST00000641864 4484 ntBASIC3.51□□□□□ -1.85
VPS39Q96JC1 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
VPS39Q96JC1 MIR30E-201ENST00000362104 92 ntBASIC3.51□□□□□ -1.85
VPS39Q96JC1 RNU6-582P-201ENST00000362989 107 ntBASIC3.51□□□□□ -1.85
VPS39Q96JC1 RNU5B-4P-201ENST00000363508 111 ntBASIC3.51□□□□□ -1.85
VPS39Q96JC1 RNA5SP51-201ENST00000364750 119 ntBASIC3.51□□□□□ -1.85
VPS39Q96JC1 SNORD3H-201ENST00000384486 214 ntBASIC3.51□□□□□ -1.85
VPS39Q96JC1 U3.29-201ENST00000391296 212 ntBASIC3.51□□□□□ -1.85
VPS39Q96JC1 CYCSP45-201ENST00000402289 315 ntBASIC3.51□□□□□ -1.85
VPS39Q96JC1 AL024474.1-201ENST00000404655 591 ntBASIC3.51□□□□□ -1.85
VPS39Q96JC1 AL355615.1-201ENST00000406187 641 ntBASIC3.51□□□□□ -1.85
VPS39Q96JC1 RNU6-55P-201ENST00000411092 107 ntBASIC3.51□□□□□ -1.85
VPS39Q96JC1 RNU6-954P-201ENST00000411355 107 ntBASIC3.51□□□□□ -1.85
VPS39Q96JC1 FCF1P2-201ENST00000415284 583 ntBASIC3.51□□□□□ -1.85
VPS39Q96JC1 TAF13P2-201ENST00000416876 286 ntBASIC3.51□□□□□ -1.85
VPS39Q96JC1 TEX41-203ENST00000420472 765 ntTSL 3 BASIC3.51□□□□□ -1.85
VPS39Q96JC1 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC3.51□□□□□ -1.85
VPS39Q96JC1 SFR1P2-201ENST00000421841 730 ntBASIC3.51□□□□□ -1.85
VPS39Q96JC1 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC3.51□□□□□ -1.85
VPS39Q96JC1 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC3.51□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 125.6 ms