Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AC108941.1-201ENST00000502853 530 ntBASIC3.44□□□□□ -1.86
ZNF540Q8NDQ6 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.44□□□□□ -1.86
ZNF540Q8NDQ6 RNU6-467P-201ENST00000517027 110 ntBASIC3.44□□□□□ -1.86
ZNF540Q8NDQ6 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC3.44□□□□□ -1.86
ZNF540Q8NDQ6 PAICSP4-201ENST00000517543 1253 ntBASIC3.44□□□□□ -1.86
ZNF540Q8NDQ6 PTS-202ENST00000524931 696 ntTSL 3 BASIC3.44□□□□□ -1.86
ZNF540Q8NDQ6 OR10V3P-201ENST00000525712 725 ntBASIC3.44□□□□□ -1.86
ZNF540Q8NDQ6 AC120057.2-201ENST00000571520 271 ntBASIC3.44□□□□□ -1.86
ZNF540Q8NDQ6 MIR5685-201ENST00000579080 79 ntBASIC3.44□□□□□ -1.86
ZNF540Q8NDQ6 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC3.44□□□□□ -1.86
ZNF540Q8NDQ6 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC3.44□□□□□ -1.86
ZNF540Q8NDQ6 AC091167.4-201ENST00000605079 184 ntBASIC3.44□□□□□ -1.86
ZNF540Q8NDQ6 RPL21P136-201ENST00000605378 396 ntBASIC3.44□□□□□ -1.86
ZNF540Q8NDQ6 AL392048.1-201ENST00000613946 534 ntBASIC3.44□□□□□ -1.86
ZNF540Q8NDQ6 AC091046.2-201ENST00000620775 665 ntBASIC3.44□□□□□ -1.86
ZNF540Q8NDQ6 MIR6500-201ENST00000622700 86 ntBASIC3.44□□□□□ -1.86
ZNF540Q8NDQ6 AC091925.2-201ENST00000625059 256 ntBASIC3.44□□□□□ -1.86
ZNF540Q8NDQ6 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC3.44□□□□□ -1.86
ZNF540Q8NDQ6 MFSD8-245ENST00000641743 948 ntBASIC3.44□□□□□ -1.86
ZNF540Q8NDQ6 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
ZNF540Q8NDQ6 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
ZNF540Q8NDQ6 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
ZNF540Q8NDQ6 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.43□□□□□ -1.86
ZNF540Q8NDQ6 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
ZNF540Q8NDQ6 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
ZNF540Q8NDQ6 HMGB1P5-201ENST00000255320 642 ntBASIC3.43□□□□□ -1.86
ZNF540Q8NDQ6 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
ZNF540Q8NDQ6 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC3.43□□□□□ -1.86
ZNF540Q8NDQ6 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
ZNF540Q8NDQ6 RNU6-878P-201ENST00000384578 110 ntBASIC3.43□□□□□ -1.86
ZNF540Q8NDQ6 PTGES3P2-201ENST00000407942 482 ntBASIC3.43□□□□□ -1.86
ZNF540Q8NDQ6 RNA5SP38-201ENST00000410750 119 ntBASIC3.43□□□□□ -1.86
ZNF540Q8NDQ6 CYCSP19-201ENST00000411715 316 ntBASIC3.43□□□□□ -1.86
ZNF540Q8NDQ6 AC092447.6-201ENST00000414578 210 ntBASIC3.43□□□□□ -1.86
ZNF540Q8NDQ6 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC3.43□□□□□ -1.86
ZNF540Q8NDQ6 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC3.43□□□□□ -1.86
ZNF540Q8NDQ6 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC3.43□□□□□ -1.86
ZNF540Q8NDQ6 AC079780.1-201ENST00000428259 207 ntBASIC3.43□□□□□ -1.86
ZNF540Q8NDQ6 AL158071.1-201ENST00000430315 461 ntBASIC3.43□□□□□ -1.86
ZNF540Q8NDQ6 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC3.43□□□□□ -1.86
ZNF540Q8NDQ6 AL645638.1-201ENST00000440519 361 ntBASIC3.43□□□□□ -1.86
ZNF540Q8NDQ6 VN1R34P-201ENST00000447387 883 ntBASIC3.43□□□□□ -1.86
ZNF540Q8NDQ6 MRPS31P2-201ENST00000451581 518 ntBASIC3.43□□□□□ -1.86
ZNF540Q8NDQ6 AC091179.1-201ENST00000461606 579 ntBASIC3.43□□□□□ -1.86
ZNF540Q8NDQ6 ST13P14-201ENST00000474095 734 ntBASIC3.43□□□□□ -1.86
ZNF540Q8NDQ6 RPS3AP6-201ENST00000484430 795 ntBASIC3.43□□□□□ -1.86
ZNF540Q8NDQ6 RNA5SP208-201ENST00000516156 78 ntBASIC3.43□□□□□ -1.86
ZNF540Q8NDQ6 RNU1-45P-201ENST00000517191 141 ntBASIC3.43□□□□□ -1.86
ZNF540Q8NDQ6 RNA5SP179-201ENST00000517284 121 ntBASIC3.43□□□□□ -1.86
ZNF540Q8NDQ6 NDUFB9P3-201ENST00000521269 501 ntBASIC3.43□□□□□ -1.86
ZNF540Q8NDQ6 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC3.43□□□□□ -1.86
ZNF540Q8NDQ6 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
ZNF540Q8NDQ6 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC3.43□□□□□ -1.86
ZNF540Q8NDQ6 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC3.43□□□□□ -1.86
ZNF540Q8NDQ6 LINC00871-202ENST00000556071 554 ntTSL 3 BASIC3.43□□□□□ -1.86
ZNF540Q8NDQ6 TGIF1P1-201ENST00000558095 802 ntBASIC3.43□□□□□ -1.86
ZNF540Q8NDQ6 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC3.43□□□□□ -1.86
ZNF540Q8NDQ6 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC3.43□□□□□ -1.86
ZNF540Q8NDQ6 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC3.43□□□□□ -1.86
ZNF540Q8NDQ6 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC3.43□□□□□ -1.86
ZNF540Q8NDQ6 AC098483.2-201ENST00000603158 454 ntBASIC3.43□□□□□ -1.86
ZNF540Q8NDQ6 AC008739.3-201ENST00000603262 127 ntBASIC3.43□□□□□ -1.86
ZNF540Q8NDQ6 AL109620.1-201ENST00000618738 1197 ntBASIC3.43□□□□□ -1.86
ZNF540Q8NDQ6 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC3.43□□□□□ -1.86
ZNF540Q8NDQ6 MIR7153-201ENST00000637758 57 ntBASIC3.43□□□□□ -1.86
ZNF540Q8NDQ6 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC3.43□□□□□ -1.86
ZNF540Q8NDQ6 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
ZNF540Q8NDQ6 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
ZNF540Q8NDQ6 AL513185.3-201ENST00000433335 1300 ntBASIC3.43□□□□□ -1.86
ZNF540Q8NDQ6 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.42□□□□□ -1.86
ZNF540Q8NDQ6 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC3.42□□□□□ -1.86
ZNF540Q8NDQ6 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.42□□□□□ -1.86
ZNF540Q8NDQ6 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
ZNF540Q8NDQ6 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC3.42□□□□□ -1.86
ZNF540Q8NDQ6 RNU6-354P-201ENST00000383862 107 ntBASIC3.42□□□□□ -1.86
ZNF540Q8NDQ6 RNU6-610P-201ENST00000384264 107 ntBASIC3.42□□□□□ -1.86
ZNF540Q8NDQ6 MIR199A2-201ENST00000385289 110 ntBASIC3.42□□□□□ -1.86
ZNF540Q8NDQ6 AL355615.1-201ENST00000406187 641 ntBASIC3.42□□□□□ -1.86
ZNF540Q8NDQ6 RNU2-15P-201ENST00000410692 191 ntBASIC3.42□□□□□ -1.86
ZNF540Q8NDQ6 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC3.42□□□□□ -1.86
ZNF540Q8NDQ6 MRPL50P2-201ENST00000416821 482 ntBASIC3.42□□□□□ -1.86
ZNF540Q8NDQ6 SSXP9-201ENST00000417503 292 ntBASIC3.42□□□□□ -1.86
ZNF540Q8NDQ6 TEX41-203ENST00000420472 765 ntTSL 3 BASIC3.42□□□□□ -1.86
ZNF540Q8NDQ6 RPL7P46-201ENST00000425129 740 ntBASIC3.42□□□□□ -1.86
ZNF540Q8NDQ6 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC3.42□□□□□ -1.86
ZNF540Q8NDQ6 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC3.42□□□□□ -1.86
ZNF540Q8NDQ6 TXNP1-201ENST00000441872 371 ntBASIC3.42□□□□□ -1.86
ZNF540Q8NDQ6 AC026347.1-201ENST00000463255 474 ntTSL 3 BASIC3.42□□□□□ -1.86
ZNF540Q8NDQ6 AC091564.1-201ENST00000464563 479 ntBASIC3.42□□□□□ -1.86
ZNF540Q8NDQ6 RPS17P11-201ENST00000474297 293 ntBASIC3.42□□□□□ -1.86
ZNF540Q8NDQ6 AC015908.1-201ENST00000478739 476 ntBASIC3.42□□□□□ -1.86
ZNF540Q8NDQ6 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
ZNF540Q8NDQ6 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC3.42□□□□□ -1.86
ZNF540Q8NDQ6 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC3.42□□□□□ -1.86
ZNF540Q8NDQ6 RAC1P2-201ENST00000511164 579 ntBASIC3.42□□□□□ -1.86
ZNF540Q8NDQ6 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC3.42□□□□□ -1.86
ZNF540Q8NDQ6 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC3.42□□□□□ -1.86
ZNF540Q8NDQ6 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC3.42□□□□□ -1.86
ZNF540Q8NDQ6 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.42□□□□□ -1.86
ZNF540Q8NDQ6 CYCSP30-201ENST00000546447 172 ntBASIC3.42□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 84.2 ms