Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 MIR591-201ENST00000385290 95 ntBASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 SNORD17-201ENST00000390930 237 ntBASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 SNX10-203ENST00000409367 746 ntTSL 5 BASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 SYF2P2-201ENST00000417620 583 ntBASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 OFD1P2Y-201ENST00000421895 1149 ntBASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 GLRXP1-201ENST00000423261 334 ntBASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 AL035410.1-201ENST00000427409 427 ntBASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 MTCYBP32-201ENST00000427945 1084 ntBASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 AC018644.1-201ENST00000429934 551 ntBASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 AC005345.1-201ENST00000431868 217 ntBASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 AL133547.1-201ENST00000448546 220 ntBASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 SLC31A1P1-201ENST00000451221 567 ntBASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 NPM1P13-201ENST00000452663 865 ntBASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 HMGN1P18-201ENST00000457642 277 ntBASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 AC021205.2-201ENST00000480069 347 ntBASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 MTCO3P35-201ENST00000485582 781 ntBASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 AC016550.1-201ENST00000505348 785 ntBASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 AC112198.1-201ENST00000505369 1220 ntBASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 PAICSP4-201ENST00000517543 1253 ntBASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 AC023632.4-201ENST00000517783 191 ntBASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 UBE2NP1-201ENST00000545592 458 ntBASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 BNIP3P5-201ENST00000562290 498 ntBASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 AP001542.2-201ENST00000593141 364 ntBASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 GAS5-AS1-201ENST00000602767 694 ntBASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 ACTR3BP1-201ENST00000605584 1247 ntBASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 AP005137.2-201ENST00000609238 400 ntBASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 MTND5P27-201ENST00000428871 1720 ntBASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 POMP-202ENST00000460403 1428 ntTSL 3 BASIC3.7□□□□□ -1.82
CCDC40Q4G0X9 RNU6-989P-201ENST00000362756 107 ntBASIC3.69□□□□□ -1.82
CCDC40Q4G0X9 RNU6-761P-201ENST00000384148 107 ntBASIC3.69□□□□□ -1.82
CCDC40Q4G0X9 AL603865.2-201ENST00000401679 213 ntBASIC3.69□□□□□ -1.82
CCDC40Q4G0X9 RNA5SP129-201ENST00000410276 118 ntBASIC3.69□□□□□ -1.82
CCDC40Q4G0X9 AC093578.1-201ENST00000415219 368 ntBASIC3.69□□□□□ -1.82
CCDC40Q4G0X9 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.69□□□□□ -1.82
CCDC40Q4G0X9 BX842559.1-201ENST00000419615 532 ntBASIC3.69□□□□□ -1.82
CCDC40Q4G0X9 FNDC3CP-201ENST00000420795 1155 ntBASIC3.69□□□□□ -1.82
CCDC40Q4G0X9 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC3.69□□□□□ -1.82
CCDC40Q4G0X9 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC3.69□□□□□ -1.82
CCDC40Q4G0X9 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.69□□□□□ -1.82
CCDC40Q4G0X9 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC3.69□□□□□ -1.82
CCDC40Q4G0X9 RPL21P23-201ENST00000446654 460 ntBASIC3.69□□□□□ -1.82
CCDC40Q4G0X9 RPS24P6-201ENST00000452670 400 ntBASIC3.69□□□□□ -1.82
CCDC40Q4G0X9 RN7SL542P-201ENST00000467147 294 ntBASIC3.69□□□□□ -1.82
CCDC40Q4G0X9 AC010285.1-201ENST00000470580 392 ntBASIC3.69□□□□□ -1.82
CCDC40Q4G0X9 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.69□□□□□ -1.82
CCDC40Q4G0X9 AL024509.2-201ENST00000493462 493 ntBASIC3.69□□□□□ -1.82
CCDC40Q4G0X9 FCF1P8-201ENST00000510322 597 ntBASIC3.69□□□□□ -1.82
CCDC40Q4G0X9 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC3.69□□□□□ -1.82
CCDC40Q4G0X9 RNU4ATAC10P-201ENST00000516967 122 ntBASIC3.69□□□□□ -1.82
CCDC40Q4G0X9 snoZ278.1-201ENST00000517059 112 ntBASIC3.69□□□□□ -1.82
CCDC40Q4G0X9 RPL12P22-201ENST00000519073 490 ntBASIC3.69□□□□□ -1.82
CCDC40Q4G0X9 AC087894.1-201ENST00000538359 518 ntBASIC3.69□□□□□ -1.82
CCDC40Q4G0X9 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.69□□□□□ -1.82
CCDC40Q4G0X9 TRAV37-201ENST00000553906 342 ntBASIC3.69□□□□□ -1.82
CCDC40Q4G0X9 AC093519.1-201ENST00000566109 298 ntBASIC3.69□□□□□ -1.82
CCDC40Q4G0X9 AC090666.1-201ENST00000578241 445 ntBASIC3.69□□□□□ -1.82
CCDC40Q4G0X9 AL109618.2-201ENST00000605527 211 ntBASIC3.69□□□□□ -1.82
CCDC40Q4G0X9 AC099785.1-201ENST00000605697 437 ntBASIC3.69□□□□□ -1.82
CCDC40Q4G0X9 AC107294.3-201ENST00000609211 526 ntBASIC3.69□□□□□ -1.82
CCDC40Q4G0X9 AC006249.1-201ENST00000621223 471 ntBASIC3.69□□□□□ -1.82
CCDC40Q4G0X9 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC3.69□□□□□ -1.82
CCDC40Q4G0X9 AC243312.2-201ENST00000623340 601 ntBASIC3.69□□□□□ -1.82
CCDC40Q4G0X9 AC006963.1-201ENST00000624003 1052 ntBASIC3.69□□□□□ -1.82
CCDC40Q4G0X9 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC3.69□□□□□ -1.82
CCDC40Q4G0X9 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.69□□□□□ -1.82
CCDC40Q4G0X9 AC005183.1-201ENST00000603687 1979 ntBASIC3.69□□□□□ -1.82
CCDC40Q4G0X9 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
CCDC40Q4G0X9 AC004972.1-201ENST00000623934 2209 ntBASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 RNU6-251P-201ENST00000363235 104 ntBASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 RNU6-730P-201ENST00000383954 104 ntBASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 MIR218-2-201ENST00000385006 110 ntBASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 MTND4LP20-201ENST00000402379 270 ntBASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 AL023807.1-201ENST00000407932 359 ntBASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 AL024507.1-201ENST00000412741 274 ntBASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 HSFY1P1-201ENST00000423928 1178 ntBASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 RPS6P14-201ENST00000425165 719 ntBASIC3.68□□□□□ -1.82
CCDC40Q4G0X9 AC092634.2-201ENST00000428146 1010 ntBASIC3.68□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 117.4 ms