Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL28A1Q2UY09 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL28A1Q2UY09 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL28A1Q2UY09 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC4.04□□□□□ -1.76
COL28A1Q2UY09 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC4.04□□□□□ -1.76
COL28A1Q2UY09 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL28A1Q2UY09 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL28A1Q2UY09 RNU6-462P-201ENST00000362659 105 ntBASIC4.04□□□□□ -1.76
COL28A1Q2UY09 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
COL28A1Q2UY09 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
COL28A1Q2UY09 RNU1-44P-201ENST00000384453 163 ntBASIC4.04□□□□□ -1.76
COL28A1Q2UY09 MIR3065-201ENST00000390137 79 ntBASIC4.04□□□□□ -1.76
COL28A1Q2UY09 VN1R8P-201ENST00000407739 893 ntBASIC4.04□□□□□ -1.76
COL28A1Q2UY09 RNA5SP36-201ENST00000410197 133 ntBASIC4.04□□□□□ -1.76
COL28A1Q2UY09 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC4.04□□□□□ -1.76
COL28A1Q2UY09 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC4.04□□□□□ -1.76
COL28A1Q2UY09 USP9YP26-201ENST00000421008 661 ntBASIC4.04□□□□□ -1.76
COL28A1Q2UY09 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC4.04□□□□□ -1.76
COL28A1Q2UY09 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC4.04□□□□□ -1.76
COL28A1Q2UY09 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC4.04□□□□□ -1.76
COL28A1Q2UY09 UBE2V1P3-201ENST00000439651 417 ntBASIC4.04□□□□□ -1.76
COL28A1Q2UY09 RPL23AP33-201ENST00000442301 452 ntBASIC4.04□□□□□ -1.76
COL28A1Q2UY09 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC4.04□□□□□ -1.76
COL28A1Q2UY09 AL590399.6-201ENST00000446396 307 ntBASIC4.04□□□□□ -1.76
COL28A1Q2UY09 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC4.04□□□□□ -1.76
COL28A1Q2UY09 RPL23AP35-201ENST00000451906 501 ntBASIC4.04□□□□□ -1.76
COL28A1Q2UY09 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC4.04□□□□□ -1.76
COL28A1Q2UY09 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC4.04□□□□□ -1.76
COL28A1Q2UY09 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC4.04□□□□□ -1.76
COL28A1Q2UY09 RPL30P6-201ENST00000475925 342 ntBASIC4.04□□□□□ -1.76
COL28A1Q2UY09 AC090453.1-201ENST00000495560 436 ntBASIC4.04□□□□□ -1.76
COL28A1Q2UY09 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC4.04□□□□□ -1.76
COL28A1Q2UY09 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC4.04□□□□□ -1.76
COL28A1Q2UY09 TMEM251P1-201ENST00000503717 318 ntBASIC4.04□□□□□ -1.76
COL28A1Q2UY09 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC4.04□□□□□ -1.76
COL28A1Q2UY09 AC010486.3-201ENST00000511602 785 ntBASIC4.04□□□□□ -1.76
COL28A1Q2UY09 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC4.04□□□□□ -1.76
COL28A1Q2UY09 MTCO1P47-201ENST00000523889 1271 ntBASIC4.04□□□□□ -1.76
COL28A1Q2UY09 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC4.04□□□□□ -1.76
COL28A1Q2UY09 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC4.04□□□□□ -1.76
COL28A1Q2UY09 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC4.04□□□□□ -1.76
COL28A1Q2UY09 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC4.04□□□□□ -1.76
COL28A1Q2UY09 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC4.04□□□□□ -1.76
COL28A1Q2UY09 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC4.04□□□□□ -1.76
COL28A1Q2UY09 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.04□□□□□ -1.76
COL28A1Q2UY09 AC135628.1-201ENST00000568867 534 ntBASIC4.04□□□□□ -1.76
COL28A1Q2UY09 AL355812.1-201ENST00000603215 216 ntBASIC4.04□□□□□ -1.76
COL28A1Q2UY09 AC083899.3-201ENST00000603413 594 ntBASIC4.04□□□□□ -1.76
COL28A1Q2UY09 AL160290.3-201ENST00000604869 165 ntBASIC4.04□□□□□ -1.76
COL28A1Q2UY09 AC010201.1-201ENST00000605051 540 ntBASIC4.04□□□□□ -1.76
COL28A1Q2UY09 RNU6-88P-201ENST00000606801 100 ntBASIC4.04□□□□□ -1.76
COL28A1Q2UY09 AC024560.3-201ENST00000608482 349 ntBASIC4.04□□□□□ -1.76
COL28A1Q2UY09 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC4.04□□□□□ -1.76
COL28A1Q2UY09 AC090116.1-201ENST00000615679 446 ntBASIC4.04□□□□□ -1.76
COL28A1Q2UY09 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC4.04□□□□□ -1.76
COL28A1Q2UY09 MIR6891-201ENST00000618788 93 ntBASIC4.04□□□□□ -1.76
COL28A1Q2UY09 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC4.04□□□□□ -1.76
COL28A1Q2UY09 AC007546.2-201ENST00000623996 360 ntBASIC4.04□□□□□ -1.76
COL28A1Q2UY09 PCNP-208ENST00000627393 136 ntTSL 2 BASIC4.04□□□□□ -1.76
COL28A1Q2UY09 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC4.04□□□□□ -1.76
COL28A1Q2UY09 AL034408.1-202ENST00000636088 415 ntBASIC4.04□□□□□ -1.76
COL28A1Q2UY09 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC4.04□□□□□ -1.76
COL28A1Q2UY09 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC4.04□□□□□ -1.76
COL28A1Q2UY09 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
COL28A1Q2UY09 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC4.04□□□□□ -1.76
COL28A1Q2UY09 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL28A1Q2UY09 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4.04□□□□□ -1.76
COL28A1Q2UY09 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL28A1Q2UY09 AL356489.2-201ENST00000566968 3528 ntBASIC4.04□□□□□ -1.76
COL28A1Q2UY09 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL28A1Q2UY09 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL28A1Q2UY09 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.04□□□□□ -1.76
COL28A1Q2UY09 MTND5P1-201ENST00000445440 1375 ntBASIC4.03□□□□□ -1.76
COL28A1Q2UY09 AC011477.1-204ENST00000623416 1325 ntBASIC4.03□□□□□ -1.76
COL28A1Q2UY09 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
COL28A1Q2UY09 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
COL28A1Q2UY09 RNA5SP307-201ENST00000362863 116 ntBASIC4.03□□□□□ -1.76
COL28A1Q2UY09 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
COL28A1Q2UY09 RNU6-1279P-201ENST00000383917 103 ntBASIC4.03□□□□□ -1.76
COL28A1Q2UY09 SLC9B1P2-201ENST00000398120 1184 ntBASIC4.03□□□□□ -1.76
COL28A1Q2UY09 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC4.03□□□□□ -1.76
COL28A1Q2UY09 MTCYBP24-201ENST00000420387 1106 ntBASIC4.03□□□□□ -1.76
COL28A1Q2UY09 AL035410.1-201ENST00000427409 427 ntBASIC4.03□□□□□ -1.76
COL28A1Q2UY09 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4.03□□□□□ -1.76
COL28A1Q2UY09 ELOCP18-201ENST00000434209 337 ntBASIC4.03□□□□□ -1.76
COL28A1Q2UY09 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC4.03□□□□□ -1.76
COL28A1Q2UY09 HLA-N-201ENST00000437516 135 ntBASIC4.03□□□□□ -1.76
COL28A1Q2UY09 AL445567.1-201ENST00000439121 144 ntBASIC4.03□□□□□ -1.76
COL28A1Q2UY09 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC4.03□□□□□ -1.76
COL28A1Q2UY09 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC4.03□□□□□ -1.76
COL28A1Q2UY09 PRDX3P3-201ENST00000447765 522 ntBASIC4.03□□□□□ -1.76
COL28A1Q2UY09 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC4.03□□□□□ -1.76
COL28A1Q2UY09 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC4.03□□□□□ -1.76
COL28A1Q2UY09 BZW1P2-201ENST00000473537 826 ntBASIC4.03□□□□□ -1.76
COL28A1Q2UY09 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC4.03□□□□□ -1.76
COL28A1Q2UY09 AC005798.1-201ENST00000513715 387 ntBASIC4.03□□□□□ -1.76
COL28A1Q2UY09 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC4.03□□□□□ -1.76
COL28A1Q2UY09 RN7SKP13-201ENST00000515933 244 ntBASIC4.03□□□□□ -1.76
COL28A1Q2UY09 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.03□□□□□ -1.76
COL28A1Q2UY09 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 113.5 ms