Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 Y_RNA.688-201ENST00000516565 95 ntBASIC3.14□□□□□ -1.91
COL4A4P53420 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC3.14□□□□□ -1.91
COL4A4P53420 AC068657.1-201ENST00000520807 306 ntBASIC3.14□□□□□ -1.91
COL4A4P53420 EEF1A1P37-201ENST00000522748 715 ntBASIC3.14□□□□□ -1.91
COL4A4P53420 C1DP5-201ENST00000525775 383 ntBASIC3.14□□□□□ -1.91
COL4A4P53420 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC3.14□□□□□ -1.91
COL4A4P53420 AC079148.1-201ENST00000565944 819 ntBASIC3.14□□□□□ -1.91
COL4A4P53420 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC3.14□□□□□ -1.91
COL4A4P53420 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
COL4A4P53420 RPP40P2-201ENST00000603596 712 ntBASIC3.14□□□□□ -1.91
COL4A4P53420 Z99289.3-201ENST00000605586 594 ntBASIC3.14□□□□□ -1.91
COL4A4P53420 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC3.14□□□□□ -1.91
COL4A4P53420 AC009090.3-201ENST00000616553 565 ntBASIC3.14□□□□□ -1.91
COL4A4P53420 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC3.14□□□□□ -1.91
COL4A4P53420 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC3.14□□□□□ -1.91
COL4A4P53420 AC099654.8-201ENST00000637757 681 ntBASIC3.14□□□□□ -1.91
COL4A4P53420 AC134980.1-208ENST00000640228 535 ntTSL 5 BASIC3.14□□□□□ -1.91
COL4A4P53420 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
COL4A4P53420 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.14□□□□□ -1.91
COL4A4P53420 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC3.13□□□□□ -1.91
COL4A4P53420 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC3.13□□□□□ -1.91
COL4A4P53420 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC3.13□□□□□ -1.91
COL4A4P53420 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
COL4A4P53420 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC3.13□□□□□ -1.91
COL4A4P53420 MIR708-201ENST00000390708 88 ntBASIC3.13□□□□□ -1.91
COL4A4P53420 RPL21P3-201ENST00000395517 478 ntBASIC3.13□□□□□ -1.91
COL4A4P53420 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC3.13□□□□□ -1.91
COL4A4P53420 ZNF736P7Y-201ENST00000425158 820 ntBASIC3.13□□□□□ -1.91
COL4A4P53420 AL445528.1-201ENST00000426330 420 ntBASIC3.13□□□□□ -1.91
COL4A4P53420 AC063976.3-201ENST00000426849 329 ntBASIC3.13□□□□□ -1.91
COL4A4P53420 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC3.13□□□□□ -1.91
COL4A4P53420 MTND4P32-201ENST00000437189 1237 ntBASIC3.13□□□□□ -1.91
COL4A4P53420 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC3.13□□□□□ -1.91
COL4A4P53420 AC146507.2-201ENST00000460608 476 ntBASIC3.13□□□□□ -1.91
COL4A4P53420 AC104164.3-201ENST00000467363 1258 ntBASIC3.13□□□□□ -1.91
COL4A4P53420 AC104687.1-201ENST00000485829 412 ntBASIC3.13□□□□□ -1.91
COL4A4P53420 AC106872.2-201ENST00000494303 480 ntBASIC3.13□□□□□ -1.91
COL4A4P53420 AC091435.1-201ENST00000505442 584 ntBASIC3.13□□□□□ -1.91
COL4A4P53420 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.13□□□□□ -1.91
COL4A4P53420 SNORA31.21-201ENST00000517180 77 ntBASIC3.13□□□□□ -1.91
COL4A4P53420 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC3.13□□□□□ -1.91
COL4A4P53420 AC245166.1-201ENST00000521012 253 ntBASIC3.13□□□□□ -1.91
COL4A4P53420 RGS4-207ENST00000527809 817 ntTSL 4 BASIC3.13□□□□□ -1.91
COL4A4P53420 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC3.13□□□□□ -1.91
COL4A4P53420 DUXAP5-201ENST00000529668 529 ntBASIC3.13□□□□□ -1.91
COL4A4P53420 AHI1-217ENST00000534469 680 ntTSL 3 BASIC3.13□□□□□ -1.91
COL4A4P53420 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC3.13□□□□□ -1.91
COL4A4P53420 MIR4509-3-201ENST00000578671 94 ntBASIC3.13□□□□□ -1.91
COL4A4P53420 MIR4644-201ENST00000579929 84 ntBASIC3.13□□□□□ -1.91
COL4A4P53420 MIR4509-2-201ENST00000583920 94 ntBASIC3.13□□□□□ -1.91
COL4A4P53420 MTCO2P2-201ENST00000591258 225 ntBASIC3.13□□□□□ -1.91
COL4A4P53420 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC3.13□□□□□ -1.91
COL4A4P53420 AL121652.1-201ENST00000608851 448 ntBASIC3.13□□□□□ -1.91
COL4A4P53420 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
COL4A4P53420 MIR4509-1-201ENST00000618224 94 ntBASIC3.13□□□□□ -1.91
COL4A4P53420 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC3.13□□□□□ -1.91
COL4A4P53420 AC022031.1-201ENST00000585985 2593 ntBASIC3.13□□□□□ -1.91
COL4A4P53420 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
COL4A4P53420 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
COL4A4P53420 AC107081.3-201ENST00000612715 2034 ntBASIC3.12□□□□□ -1.91
COL4A4P53420 AC106754.1-201ENST00000562632 1513 ntBASIC3.12□□□□□ -1.91
COL4A4P53420 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.12□□□□□ -1.91
COL4A4P53420 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
COL4A4P53420 RNU6-1257P-201ENST00000384625 110 ntBASIC3.12□□□□□ -1.91
COL4A4P53420 AL079342.1-201ENST00000401460 267 ntBASIC3.12□□□□□ -1.91
COL4A4P53420 AL589655.1-201ENST00000405398 482 ntBASIC3.12□□□□□ -1.91
COL4A4P53420 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC3.12□□□□□ -1.91
COL4A4P53420 RAP1BP1-201ENST00000412709 553 ntBASIC3.12□□□□□ -1.91
COL4A4P53420 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC3.12□□□□□ -1.91
COL4A4P53420 AC017078.1-201ENST00000416146 368 ntBASIC3.12□□□□□ -1.91
COL4A4P53420 AC073464.3-201ENST00000422564 712 ntBASIC3.12□□□□□ -1.91
COL4A4P53420 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC3.12□□□□□ -1.91
COL4A4P53420 AC000111.1-201ENST00000441019 221 ntTSL 3 BASIC3.12□□□□□ -1.91
COL4A4P53420 CLIC4P1-201ENST00000453177 535 ntBASIC3.12□□□□□ -1.91
COL4A4P53420 AC114967.1-201ENST00000504890 259 ntBASIC3.12□□□□□ -1.91
COL4A4P53420 AC111000.2-201ENST00000507775 550 ntBASIC3.12□□□□□ -1.91
COL4A4P53420 TXNP6-201ENST00000510190 310 ntBASIC3.12□□□□□ -1.91
COL4A4P53420 AC008494.2-201ENST00000514544 370 ntBASIC3.12□□□□□ -1.91
COL4A4P53420 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC3.12□□□□□ -1.91
COL4A4P53420 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC3.12□□□□□ -1.91
COL4A4P53420 AC007834.2-201ENST00000536310 343 ntBASIC3.12□□□□□ -1.91
COL4A4P53420 AC125611.1-201ENST00000549563 229 ntBASIC3.12□□□□□ -1.91
COL4A4P53420 AC112211.1-201ENST00000607832 305 ntTSL 3 BASIC3.12□□□□□ -1.91
COL4A4P53420 AC092140.2-201ENST00000618027 521 ntBASIC3.12□□□□□ -1.91
COL4A4P53420 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.12□□□□□ -1.91
COL4A4P53420 AC126544.2-201ENST00000625174 749 ntBASIC3.12□□□□□ -1.91
COL4A4P53420 AC009303.2-205ENST00000627670 1091 ntTSL 5 BASIC3.12□□□□□ -1.91
COL4A4P53420 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
COL4A4P53420 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC3.12□□□□□ -1.91
COL4A4P53420 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC3.12□□□□□ -1.91
COL4A4P53420 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
COL4A4P53420 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
COL4A4P53420 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
COL4A4P53420 AC093010.3-201ENST00000570269 15214 ntBASIC3.12□□□□□ -1.91
COL4A4P53420 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.11□□□□□ -1.91
COL4A4P53420 AC004972.1-201ENST00000623934 2209 ntBASIC3.11□□□□□ -1.91
COL4A4P53420 RPL31P1-201ENST00000398116 372 ntBASIC3.11□□□□□ -1.91
COL4A4P53420 AC069282.1-201ENST00000411911 526 ntBASIC3.11□□□□□ -1.91
COL4A4P53420 AC107081.1-201ENST00000414975 361 ntBASIC3.11□□□□□ -1.91
COL4A4P53420 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 86.9 ms