Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.8□□□□□ -1.8
HNF4AP41235 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
HNF4AP41235 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
HNF4AP41235 RNU6-628P-201ENST00000410675 107 ntBASIC3.8□□□□□ -1.8
HNF4AP41235 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC3.8□□□□□ -1.8
HNF4AP41235 AL356320.2-201ENST00000417263 507 ntBASIC3.8□□□□□ -1.8
HNF4AP41235 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC3.8□□□□□ -1.8
HNF4AP41235 AC010099.3-201ENST00000423896 409 ntBASIC3.8□□□□□ -1.8
HNF4AP41235 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC3.8□□□□□ -1.8
HNF4AP41235 DUTP6-201ENST00000425573 462 ntBASIC3.8□□□□□ -1.8
HNF4AP41235 HIGD1AP12-201ENST00000427832 281 ntBASIC3.8□□□□□ -1.8
HNF4AP41235 MOB1AP1-201ENST00000430903 535 ntBASIC3.8□□□□□ -1.8
HNF4AP41235 RPL7P34-201ENST00000433316 712 ntBASIC3.8□□□□□ -1.8
HNF4AP41235 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC3.8□□□□□ -1.8
HNF4AP41235 RANP8-201ENST00000444720 713 ntBASIC3.8□□□□□ -1.8
HNF4AP41235 HMGB3P6-201ENST00000444896 598 ntBASIC3.8□□□□□ -1.8
HNF4AP41235 SLC31A1P1-201ENST00000451221 567 ntBASIC3.8□□□□□ -1.8
HNF4AP41235 SSXP4-201ENST00000451349 245 ntBASIC3.8□□□□□ -1.8
HNF4AP41235 U3.44-201ENST00000458938 192 ntBASIC3.8□□□□□ -1.8
HNF4AP41235 RNU7-170P-201ENST00000459303 61 ntBASIC3.8□□□□□ -1.8
HNF4AP41235 AC005410.1-202ENST00000460347 485 ntBASIC3.8□□□□□ -1.8
HNF4AP41235 HMGB1P25-201ENST00000468402 607 ntBASIC3.8□□□□□ -1.8
HNF4AP41235 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
HNF4AP41235 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC3.8□□□□□ -1.8
HNF4AP41235 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC3.8□□□□□ -1.8
HNF4AP41235 AC105914.1-201ENST00000511798 226 ntBASIC3.8□□□□□ -1.8
HNF4AP41235 AC010342.1-201ENST00000514047 877 ntBASIC3.8□□□□□ -1.8
HNF4AP41235 RNU6-27P-201ENST00000516146 107 ntBASIC3.8□□□□□ -1.8
HNF4AP41235 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC3.8□□□□□ -1.8
HNF4AP41235 AP001189.2-201ENST00000527320 189 ntBASIC3.8□□□□□ -1.8
HNF4AP41235 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC3.8□□□□□ -1.8
HNF4AP41235 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
HNF4AP41235 AC018630.1-201ENST00000541376 925 ntBASIC3.8□□□□□ -1.8
HNF4AP41235 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC3.8□□□□□ -1.8
HNF4AP41235 AC023813.2-201ENST00000564321 469 ntBASIC3.8□□□□□ -1.8
HNF4AP41235 AC007224.1-201ENST00000564410 144 ntBASIC3.8□□□□□ -1.8
HNF4AP41235 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC3.8□□□□□ -1.8
HNF4AP41235 AC120057.2-201ENST00000571520 271 ntBASIC3.8□□□□□ -1.8
HNF4AP41235 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC3.8□□□□□ -1.8
HNF4AP41235 AP001029.3-201ENST00000588063 596 ntBASIC3.8□□□□□ -1.8
HNF4AP41235 AC025588.2-201ENST00000604851 466 ntBASIC3.8□□□□□ -1.8
HNF4AP41235 AC091946.2-201ENST00000606105 291 ntBASIC3.8□□□□□ -1.8
HNF4AP41235 AL390240.1-201ENST00000612950 384 ntBASIC3.8□□□□□ -1.8
HNF4AP41235 GMFB-210ENST00000628554 639 ntTSL 4 BASIC3.8□□□□□ -1.8
HNF4AP41235 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC3.8□□□□□ -1.8
HNF4AP41235 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
HNF4AP41235 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.8□□□□□ -1.8
HNF4AP41235 MTCO1P23-201ENST00000415223 1526 ntBASIC3.8□□□□□ -1.8
HNF4AP41235 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
HNF4AP41235 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
HNF4AP41235 ACEA_U3.1-201ENST00000363057 217 ntBASIC3.79□□□□□ -1.8
HNF4AP41235 RNU6-657P-201ENST00000383904 107 ntBASIC3.79□□□□□ -1.8
HNF4AP41235 RNU6-636P-201ENST00000384598 107 ntBASIC3.79□□□□□ -1.8
HNF4AP41235 AC016769.3-201ENST00000396562 315 ntBASIC3.79□□□□□ -1.8
HNF4AP41235 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC3.79□□□□□ -1.8
HNF4AP41235 RPL21P109-201ENST00000422213 475 ntBASIC3.79□□□□□ -1.8
HNF4AP41235 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC3.79□□□□□ -1.8
HNF4AP41235 NIPA2P1-201ENST00000426223 976 ntBASIC3.79□□□□□ -1.8
HNF4AP41235 MTCO1P3-201ENST00000429327 192 ntBASIC3.79□□□□□ -1.8
HNF4AP41235 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC3.79□□□□□ -1.8
HNF4AP41235 AC084290.1-201ENST00000434995 374 ntBASIC3.79□□□□□ -1.8
HNF4AP41235 HMGN2P20-201ENST00000437531 273 ntBASIC3.79□□□□□ -1.8
HNF4AP41235 EEF1A1P39-201ENST00000440791 250 ntBASIC3.79□□□□□ -1.8
HNF4AP41235 AL500522.2-201ENST00000448562 343 ntBASIC3.79□□□□□ -1.8
HNF4AP41235 AC112492.1-201ENST00000449607 712 ntBASIC3.79□□□□□ -1.8
HNF4AP41235 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC3.79□□□□□ -1.8
HNF4AP41235 AL136097.1-201ENST00000456945 913 ntBASIC3.79□□□□□ -1.8
HNF4AP41235 RPL21P11-201ENST00000461458 483 ntBASIC3.79□□□□□ -1.8
HNF4AP41235 AL049830.2-201ENST00000480072 201 ntBASIC3.79□□□□□ -1.8
HNF4AP41235 UBE2Q2P9-201ENST00000490086 202 ntBASIC3.79□□□□□ -1.8
HNF4AP41235 AC096751.1-202ENST00000502691 1067 ntBASIC3.79□□□□□ -1.8
HNF4AP41235 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC3.79□□□□□ -1.8
HNF4AP41235 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC3.79□□□□□ -1.8
HNF4AP41235 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC3.79□□□□□ -1.8
HNF4AP41235 MIR2116-201ENST00000517221 80 ntBASIC3.79□□□□□ -1.8
HNF4AP41235 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC3.79□□□□□ -1.8
HNF4AP41235 MTCO2P15-201ENST00000532655 656 ntBASIC3.79□□□□□ -1.8
HNF4AP41235 YPEL5P3-201ENST00000547227 352 ntBASIC3.79□□□□□ -1.8
HNF4AP41235 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.79□□□□□ -1.8
HNF4AP41235 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC3.79□□□□□ -1.8
HNF4AP41235 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC3.79□□□□□ -1.8
HNF4AP41235 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.79□□□□□ -1.8
HNF4AP41235 AC136624.4-201ENST00000573044 370 ntBASIC3.79□□□□□ -1.8
HNF4AP41235 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC3.79□□□□□ -1.8
HNF4AP41235 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC3.79□□□□□ -1.8
HNF4AP41235 AC061975.8-201ENST00000587058 721 ntBASIC3.79□□□□□ -1.8
HNF4AP41235 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC3.79□□□□□ -1.8
HNF4AP41235 VN1R78P-201ENST00000597393 564 ntBASIC3.79□□□□□ -1.8
HNF4AP41235 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC3.79□□□□□ -1.8
HNF4AP41235 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC3.79□□□□□ -1.8
HNF4AP41235 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.79□□□□□ -1.8
HNF4AP41235 AC097065.2-201ENST00000608159 533 ntBASIC3.79□□□□□ -1.8
HNF4AP41235 AL158163.2-201ENST00000619110 700 ntBASIC3.79□□□□□ -1.8
HNF4AP41235 MIR6500-201ENST00000622700 86 ntBASIC3.79□□□□□ -1.8
HNF4AP41235 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
HNF4AP41235 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
HNF4AP41235 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.79□□□□□ -1.8
HNF4AP41235 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.79□□□□□ -1.8
HNF4AP41235 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
HNF4AP41235 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 93.2 ms