Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC3.23□□□□□ -1.89
COL18A1P39060 RNU6-76P-201ENST00000384060 104 ntBASIC3.23□□□□□ -1.89
COL18A1P39060 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC3.23□□□□□ -1.89
COL18A1P39060 AC011816.1-201ENST00000441346 546 ntBASIC3.23□□□□□ -1.89
COL18A1P39060 RPL9P6-201ENST00000492764 598 ntBASIC3.23□□□□□ -1.89
COL18A1P39060 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC3.23□□□□□ -1.89
COL18A1P39060 AF186190.1-201ENST00000517470 480 ntBASIC3.23□□□□□ -1.89
COL18A1P39060 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC3.23□□□□□ -1.89
COL18A1P39060 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC3.23□□□□□ -1.89
COL18A1P39060 AC046143.2-201ENST00000609789 160 ntBASIC3.23□□□□□ -1.89
COL18A1P39060 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC3.23□□□□□ -1.89
COL18A1P39060 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC3.22□□□□□ -1.89
COL18A1P39060 PHKBP1-201ENST00000450951 1951 ntBASIC3.22□□□□□ -1.89
COL18A1P39060 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.22□□□□□ -1.89
COL18A1P39060 SYT14P1-202ENST00000600441 1448 ntBASIC3.22□□□□□ -1.89
COL18A1P39060 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.22□□□□□ -1.89
COL18A1P39060 RNA5SP210-201ENST00000391034 120 ntBASIC3.22□□□□□ -1.89
COL18A1P39060 RN7SKP140-201ENST00000411196 284 ntBASIC3.22□□□□□ -1.89
COL18A1P39060 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC3.22□□□□□ -1.89
COL18A1P39060 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC3.22□□□□□ -1.89
COL18A1P39060 FAM172BP-201ENST00000487497 1089 ntBASIC3.22□□□□□ -1.89
COL18A1P39060 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
COL18A1P39060 MTHFD2P4-201ENST00000515074 1025 ntBASIC3.22□□□□□ -1.89
COL18A1P39060 AC027701.1-202ENST00000520988 459 ntTSL 3 BASIC3.22□□□□□ -1.89
COL18A1P39060 AC007620.3-201ENST00000608131 497 ntBASIC3.22□□□□□ -1.89
COL18A1P39060 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
COL18A1P39060 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.22□□□□□ -1.89
COL18A1P39060 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
COL18A1P39060 OR10AB1P-202ENST00000641219 1686 ntBASIC3.22□□□□□ -1.89
COL18A1P39060 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.21□□□□□ -1.89
COL18A1P39060 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
COL18A1P39060 MIR365B-201ENST00000362317 111 ntBASIC3.21□□□□□ -1.9
COL18A1P39060 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC3.21□□□□□ -1.9
COL18A1P39060 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC3.21□□□□□ -1.9
COL18A1P39060 PTP4A1P5-201ENST00000420305 455 ntBASIC3.21□□□□□ -1.9
COL18A1P39060 RPS12P5-201ENST00000423449 371 ntBASIC3.21□□□□□ -1.9
COL18A1P39060 AL353597.2-202ENST00000434901 373 ntBASIC3.21□□□□□ -1.9
COL18A1P39060 AC018634.1-201ENST00000437554 401 ntBASIC3.21□□□□□ -1.9
COL18A1P39060 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
COL18A1P39060 AL035551.1-201ENST00000446931 348 ntBASIC3.21□□□□□ -1.9
COL18A1P39060 ST13P20-201ENST00000447996 1065 ntBASIC3.21□□□□□ -1.9
COL18A1P39060 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC3.21□□□□□ -1.9
COL18A1P39060 RPL30P9-201ENST00000465586 330 ntBASIC3.21□□□□□ -1.9
COL18A1P39060 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC3.21□□□□□ -1.9
COL18A1P39060 AC092436.1-201ENST00000506450 503 ntBASIC3.21□□□□□ -1.9
COL18A1P39060 MTND4P2-201ENST00000507767 1203 ntBASIC3.21□□□□□ -1.9
COL18A1P39060 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC3.21□□□□□ -1.9
COL18A1P39060 CKS1BP7-201ENST00000522230 235 ntBASIC3.21□□□□□ -1.9
COL18A1P39060 AC115989.2-201ENST00000578640 563 ntBASIC3.21□□□□□ -1.9
COL18A1P39060 AC025946.2-201ENST00000603398 234 ntBASIC3.21□□□□□ -1.9
COL18A1P39060 AC004696.1-201ENST00000614345 607 ntBASIC3.21□□□□□ -1.9
COL18A1P39060 AC026634.1-201ENST00000634369 198 ntBASIC3.21□□□□□ -1.9
COL18A1P39060 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC3.21□□□□□ -1.9
COL18A1P39060 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC3.21□□□□□ -1.9
COL18A1P39060 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.21□□□□□ -1.9
COL18A1P39060 AC010329.2-201ENST00000595195 2737 ntBASIC3.21□□□□□ -1.9
COL18A1P39060 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC3.21□□□□□ -1.9
COL18A1P39060 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
COL18A1P39060 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
COL18A1P39060 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
COL18A1P39060 RPS20P25-201ENST00000412447 352 ntBASIC3.2□□□□□ -1.9
COL18A1P39060 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC3.2□□□□□ -1.9
COL18A1P39060 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC3.2□□□□□ -1.9
COL18A1P39060 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC3.2□□□□□ -1.9
COL18A1P39060 RPS27AP9-201ENST00000477681 438 ntBASIC3.2□□□□□ -1.9
COL18A1P39060 AC103975.1-201ENST00000482506 483 ntBASIC3.2□□□□□ -1.9
COL18A1P39060 AC011037.1-201ENST00000483964 558 ntBASIC3.2□□□□□ -1.9
COL18A1P39060 ACTR6P1-201ENST00000514311 1104 ntBASIC3.2□□□□□ -1.9
COL18A1P39060 AC092851.1-201ENST00000535964 478 ntBASIC3.2□□□□□ -1.9
COL18A1P39060 PDCD5P1-201ENST00000543528 309 ntBASIC3.2□□□□□ -1.9
COL18A1P39060 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC3.2□□□□□ -1.9
COL18A1P39060 AC055876.1-202ENST00000567053 138 ntBASIC3.2□□□□□ -1.9
COL18A1P39060 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC3.2□□□□□ -1.9
COL18A1P39060 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC3.2□□□□□ -1.9
COL18A1P39060 PISRT1-201ENST00000626175 531 ntBASIC3.2□□□□□ -1.9
COL18A1P39060 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC3.2□□□□□ -1.9
COL18A1P39060 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
COL18A1P39060 IPMKP1-201ENST00000425988 855 ntBASIC3.2□□□□□ -1.9
COL18A1P39060 HMGB3P8-201ENST00000449709 577 ntBASIC3.2□□□□□ -1.9
COL18A1P39060 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC3.2□□□□□ -1.9
COL18A1P39060 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC3.2□□□□□ -1.9
COL18A1P39060 AC133134.1-201ENST00000466800 359 ntBASIC3.2□□□□□ -1.9
COL18A1P39060 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC3.2□□□□□ -1.9
COL18A1P39060 VN1R17P-201ENST00000472048 1090 ntBASIC3.2□□□□□ -1.9
COL18A1P39060 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC3.2□□□□□ -1.9
COL18A1P39060 AC026436.1-201ENST00000510537 270 ntBASIC3.2□□□□□ -1.9
COL18A1P39060 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
COL18A1P39060 OR4A45P-201ENST00000529954 901 ntBASIC3.2□□□□□ -1.9
COL18A1P39060 MIR5092-201ENST00000583139 88 ntBASIC3.2□□□□□ -1.9
COL18A1P39060 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.2□□□□□ -1.9
COL18A1P39060 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
COL18A1P39060 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
COL18A1P39060 RNA5SP456-201ENST00000364002 114 ntBASIC3.19□□□□□ -1.9
COL18A1P39060 RNA5SP99-201ENST00000364020 114 ntBASIC3.19□□□□□ -1.9
COL18A1P39060 Y_RNA.238-201ENST00000364441 102 ntBASIC3.19□□□□□ -1.9
COL18A1P39060 RNU1-73P-201ENST00000383971 164 ntBASIC3.19□□□□□ -1.9
COL18A1P39060 AC022022.1-201ENST00000430304 178 ntBASIC3.19□□□□□ -1.9
COL18A1P39060 AL357520.1-201ENST00000441557 453 ntBASIC3.19□□□□□ -1.9
COL18A1P39060 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3.19□□□□□ -1.9
COL18A1P39060 RNA5SP281-201ENST00000516504 135 ntBASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms