Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 RPS29P4-201ENST00000414733 161 ntBASIC3.57□□□□□ -1.84
PTPN4P29074 MTCO3P12-201ENST00000416718 547 ntBASIC3.57□□□□□ -1.84
PTPN4P29074 GTF2IP23-201ENST00000423746 351 ntBASIC3.57□□□□□ -1.84
PTPN4P29074 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC3.57□□□□□ -1.84
PTPN4P29074 AC092634.2-201ENST00000428146 1010 ntBASIC3.57□□□□□ -1.84
PTPN4P29074 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.57□□□□□ -1.84
PTPN4P29074 HSPD1P21-201ENST00000436541 245 ntBASIC3.57□□□□□ -1.84
PTPN4P29074 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC3.57□□□□□ -1.84
PTPN4P29074 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC3.57□□□□□ -1.84
PTPN4P29074 RPL12P26-201ENST00000452430 487 ntBASIC3.57□□□□□ -1.84
PTPN4P29074 PRSS3P4-201ENST00000453323 162 ntBASIC3.57□□□□□ -1.84
PTPN4P29074 MTATP6P14-201ENST00000455189 673 ntBASIC3.57□□□□□ -1.84
PTPN4P29074 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC3.57□□□□□ -1.84
PTPN4P29074 TRBV26-201ENST00000456572 344 ntBASIC3.57□□□□□ -1.84
PTPN4P29074 RPS27P29-201ENST00000463110 252 ntBASIC3.57□□□□□ -1.84
PTPN4P29074 AC106707.2-201ENST00000484182 374 ntBASIC3.57□□□□□ -1.84
PTPN4P29074 AC068647.1-201ENST00000489539 2265 ntBASIC3.57□□□□□ -1.84
PTPN4P29074 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC3.57□□□□□ -1.84
PTPN4P29074 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC3.57□□□□□ -1.84
PTPN4P29074 THAP6-203ENST00000502620 582 ntTSL 3 BASIC3.57□□□□□ -1.84
PTPN4P29074 MTATP6P9-201ENST00000515039 680 ntBASIC3.57□□□□□ -1.84
PTPN4P29074 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC3.57□□□□□ -1.84
PTPN4P29074 RN7SKP18-201ENST00000516005 275 ntBASIC3.57□□□□□ -1.84
PTPN4P29074 RNU6-1028P-201ENST00000517164 93 ntBASIC3.57□□□□□ -1.84
PTPN4P29074 AC007991.1-201ENST00000522680 631 ntBASIC3.57□□□□□ -1.84
PTPN4P29074 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC3.57□□□□□ -1.84
PTPN4P29074 AC111188.2-201ENST00000529697 1387 ntBASIC3.57□□□□□ -1.84
PTPN4P29074 LRRC6P1-201ENST00000532188 885 ntBASIC3.57□□□□□ -1.84
PTPN4P29074 SMILR-201ENST00000533992 553 ntTSL 4 BASIC3.57□□□□□ -1.84
PTPN4P29074 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC3.57□□□□□ -1.84
PTPN4P29074 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
PTPN4P29074 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.57□□□□□ -1.84
PTPN4P29074 ZNF971P-201ENST00000562068 1249 ntBASIC3.57□□□□□ -1.84
PTPN4P29074 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
PTPN4P29074 AL020997.3-201ENST00000602843 359 ntBASIC3.57□□□□□ -1.84
PTPN4P29074 SRGNP1-201ENST00000603392 451 ntBASIC3.57□□□□□ -1.84
PTPN4P29074 AC011468.4-201ENST00000603942 409 ntBASIC3.57□□□□□ -1.84
PTPN4P29074 AP003973.1-201ENST00000604639 691 ntBASIC3.57□□□□□ -1.84
PTPN4P29074 HSPE1P14-201ENST00000605812 302 ntBASIC3.57□□□□□ -1.84
PTPN4P29074 SNORA62.6-201ENST00000606322 83 ntBASIC3.57□□□□□ -1.84
PTPN4P29074 U3.45-201ENST00000607547 219 ntBASIC3.57□□□□□ -1.84
PTPN4P29074 AC097504.2-201ENST00000608088 454 ntBASIC3.57□□□□□ -1.84
PTPN4P29074 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.57□□□□□ -1.84
PTPN4P29074 AC015967.1-201ENST00000619893 476 ntBASIC3.57□□□□□ -1.84
PTPN4P29074 AC022149.2-201ENST00000621061 203 ntBASIC3.57□□□□□ -1.84
PTPN4P29074 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC3.57□□□□□ -1.84
PTPN4P29074 LINC00836-203ENST00000628620 1179 ntTSL 5 BASIC3.57□□□□□ -1.84
PTPN4P29074 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC3.57□□□□□ -1.84
PTPN4P29074 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.57□□□□□ -1.84
PTPN4P29074 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
PTPN4P29074 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
PTPN4P29074 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC3.56□□□□□ -1.84
PTPN4P29074 MFSD8-236ENST00000641509 4050 ntBASIC3.56□□□□□ -1.84
PTPN4P29074 AL021368.2-201ENST00000606125 5352 ntBASIC3.56□□□□□ -1.84
PTPN4P29074 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
PTPN4P29074 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
PTPN4P29074 AC138915.3-201ENST00000562908 1389 ntBASIC3.56□□□□□ -1.84
PTPN4P29074 AC091152.2-201ENST00000591628 2569 ntBASIC3.56□□□□□ -1.84
PTPN4P29074 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
PTPN4P29074 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
PTPN4P29074 RNU6-50P-201ENST00000362356 103 ntBASIC3.56□□□□□ -1.84
PTPN4P29074 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.56□□□□□ -1.84
PTPN4P29074 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC3.56□□□□□ -1.84
PTPN4P29074 Y_RNA.493-201ENST00000384422 102 ntBASIC3.56□□□□□ -1.84
PTPN4P29074 AL023807.1-201ENST00000407932 359 ntBASIC3.56□□□□□ -1.84
PTPN4P29074 AIMP1P1-201ENST00000418670 937 ntBASIC3.56□□□□□ -1.84
PTPN4P29074 GLRXP1-201ENST00000423261 334 ntBASIC3.56□□□□□ -1.84
PTPN4P29074 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC3.56□□□□□ -1.84
PTPN4P29074 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC3.56□□□□□ -1.84
PTPN4P29074 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC3.56□□□□□ -1.84
PTPN4P29074 PTGES3P1-201ENST00000439531 483 ntBASIC3.56□□□□□ -1.84
PTPN4P29074 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC3.56□□□□□ -1.84
PTPN4P29074 AC125238.1-201ENST00000448842 249 ntBASIC3.56□□□□□ -1.84
PTPN4P29074 SUN3-208ENST00000453192 801 ntTSL 5 BASIC3.56□□□□□ -1.84
PTPN4P29074 AC244505.3-201ENST00000454598 187 ntBASIC3.56□□□□□ -1.84
PTPN4P29074 HMGN2P16-201ENST00000456802 261 ntBASIC3.56□□□□□ -1.84
PTPN4P29074 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC3.56□□□□□ -1.84
PTPN4P29074 AC119751.4-201ENST00000507498 357 ntBASIC3.56□□□□□ -1.84
PTPN4P29074 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC3.56□□□□□ -1.84
PTPN4P29074 AC104619.4-201ENST00000510773 249 ntBASIC3.56□□□□□ -1.84
PTPN4P29074 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.56□□□□□ -1.84
PTPN4P29074 PHBP14-201ENST00000512887 367 ntBASIC3.56□□□□□ -1.84
PTPN4P29074 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.56□□□□□ -1.84
PTPN4P29074 AC023632.1-201ENST00000518463 375 ntBASIC3.56□□□□□ -1.84
PTPN4P29074 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC3.56□□□□□ -1.84
PTPN4P29074 ZNF705CP-201ENST00000530515 889 ntBASIC3.56□□□□□ -1.84
PTPN4P29074 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.56□□□□□ -1.84
PTPN4P29074 AC004024.1-201ENST00000549244 247 ntBASIC3.56□□□□□ -1.84
PTPN4P29074 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
PTPN4P29074 AC090330.1-201ENST00000588646 764 ntBASIC3.56□□□□□ -1.84
PTPN4P29074 AL669831.4-202ENST00000590817 238 ntBASIC3.56□□□□□ -1.84
PTPN4P29074 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC3.56□□□□□ -1.84
PTPN4P29074 AC103881.1-201ENST00000603476 538 ntBASIC3.56□□□□□ -1.84
PTPN4P29074 AC092354.2-201ENST00000607786 514 ntBASIC3.56□□□□□ -1.84
PTPN4P29074 AP000238.1-201ENST00000608759 426 ntBASIC3.56□□□□□ -1.84
PTPN4P29074 XIST_intron.1-201ENST00000619444 68 ntBASIC3.56□□□□□ -1.84
PTPN4P29074 AC087821.2-201ENST00000637086 450 ntBASIC3.56□□□□□ -1.84
PTPN4P29074 AC117529.2-201ENST00000512159 2068 ntBASIC3.56□□□□□ -1.84
PTPN4P29074 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.56□□□□□ -1.84
PTPN4P29074 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 77.2 ms