Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC4.87□□□□□ -1.63
SMARCA1P28370 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC4.87□□□□□ -1.63
SMARCA1P28370 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC4.87□□□□□ -1.63
SMARCA1P28370 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC4.87□□□□□ -1.63
SMARCA1P28370 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC4.87□□□□□ -1.63
SMARCA1P28370 AC105233.3-201ENST00000531125 744 ntBASIC4.87□□□□□ -1.63
SMARCA1P28370 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC4.87□□□□□ -1.63
SMARCA1P28370 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC4.87□□□□□ -1.63
SMARCA1P28370 HSPE1P3-201ENST00000559254 309 ntBASIC4.87□□□□□ -1.63
SMARCA1P28370 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC4.87□□□□□ -1.63
SMARCA1P28370 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC4.87□□□□□ -1.63
SMARCA1P28370 MTND1P15-201ENST00000579262 949 ntBASIC4.87□□□□□ -1.63
SMARCA1P28370 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC4.87□□□□□ -1.63
SMARCA1P28370 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC4.87□□□□□ -1.63
SMARCA1P28370 AC073648.5-201ENST00000603502 305 ntBASIC4.87□□□□□ -1.63
SMARCA1P28370 AC015871.2-201ENST00000603605 948 ntBASIC4.87□□□□□ -1.63
SMARCA1P28370 AP003117.2-201ENST00000606010 545 ntBASIC4.87□□□□□ -1.63
SMARCA1P28370 AC097468.3-201ENST00000607956 456 ntBASIC4.87□□□□□ -1.63
SMARCA1P28370 AC103710.4-201ENST00000609301 899 ntBASIC4.87□□□□□ -1.63
SMARCA1P28370 AL357080.1-201ENST00000617394 239 ntBASIC4.87□□□□□ -1.63
SMARCA1P28370 PACRG-211ENST00000621363 360 ntTSL 5 BASIC4.87□□□□□ -1.63
SMARCA1P28370 MIR7702-201ENST00000621931 59 ntBASIC4.87□□□□□ -1.63
SMARCA1P28370 AL359740.1-201ENST00000624340 592 ntBASIC4.87□□□□□ -1.63
SMARCA1P28370 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC4.87□□□□□ -1.63
SMARCA1P28370 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
SMARCA1P28370 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC4.87□□□□□ -1.63
SMARCA1P28370 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SMARCA1P28370 EED-206ENST00000527888 1422 ntTSL 2 BASIC4.87□□□□□ -1.63
SMARCA1P28370 AC012020.1-201ENST00000624541 1728 ntBASIC4.86□□□□□ -1.63
SMARCA1P28370 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
SMARCA1P28370 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC4.86□□□□□ -1.63
SMARCA1P28370 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SMARCA1P28370 FGF7P2-201ENST00000332473 296 ntBASIC4.86□□□□□ -1.63
SMARCA1P28370 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC4.86□□□□□ -1.63
SMARCA1P28370 Y_RNA.3-201ENST00000362331 103 ntBASIC4.86□□□□□ -1.63
SMARCA1P28370 RNU5F-6P-201ENST00000362979 116 ntBASIC4.86□□□□□ -1.63
SMARCA1P28370 Y_RNA.97-201ENST00000363094 102 ntBASIC4.86□□□□□ -1.63
SMARCA1P28370 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC4.86□□□□□ -1.63
SMARCA1P28370 SNORA70C-201ENST00000384538 135 ntBASIC4.86□□□□□ -1.63
SMARCA1P28370 DHFRP6-201ENST00000401776 268 ntBASIC4.86□□□□□ -1.63
SMARCA1P28370 HMGB1P17-201ENST00000403495 628 ntBASIC4.86□□□□□ -1.63
SMARCA1P28370 AL023807.1-201ENST00000407932 359 ntBASIC4.86□□□□□ -1.63
SMARCA1P28370 RN7SKP33-201ENST00000410942 340 ntBASIC4.86□□□□□ -1.63
SMARCA1P28370 AC007899.1-201ENST00000412776 775 ntBASIC4.86□□□□□ -1.63
SMARCA1P28370 RPS23P10-201ENST00000416185 486 ntBASIC4.86□□□□□ -1.63
SMARCA1P28370 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC4.86□□□□□ -1.63
SMARCA1P28370 AL389915.1-201ENST00000422463 466 ntBASIC4.86□□□□□ -1.63
SMARCA1P28370 RPL23AP38-201ENST00000423801 469 ntBASIC4.86□□□□□ -1.63
SMARCA1P28370 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC4.86□□□□□ -1.63
SMARCA1P28370 SSXP1-201ENST00000453640 473 ntBASIC4.86□□□□□ -1.63
SMARCA1P28370 RPS26P28-201ENST00000470806 348 ntBASIC4.86□□□□□ -1.63
SMARCA1P28370 AP000797.1-201ENST00000478870 387 ntBASIC4.86□□□□□ -1.63
SMARCA1P28370 RPS29P19-201ENST00000479709 171 ntBASIC4.86□□□□□ -1.63
SMARCA1P28370 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC4.86□□□□□ -1.63
SMARCA1P28370 AC011825.1-201ENST00000484967 388 ntBASIC4.86□□□□□ -1.63
SMARCA1P28370 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC4.86□□□□□ -1.63
SMARCA1P28370 ARL2BPP4-201ENST00000506854 471 ntBASIC4.86□□□□□ -1.63
SMARCA1P28370 AC104057.1-201ENST00000515547 497 ntBASIC4.86□□□□□ -1.63
SMARCA1P28370 RN7SKP277-201ENST00000516895 283 ntBASIC4.86□□□□□ -1.63
SMARCA1P28370 RN7SKP234-201ENST00000517173 224 ntBASIC4.86□□□□□ -1.63
SMARCA1P28370 TRAPPC2P2-201ENST00000517589 409 ntBASIC4.86□□□□□ -1.63
SMARCA1P28370 ZNF705CP-201ENST00000530515 889 ntBASIC4.86□□□□□ -1.63
SMARCA1P28370 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC4.86□□□□□ -1.63
SMARCA1P28370 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SMARCA1P28370 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC4.86□□□□□ -1.63
SMARCA1P28370 AC008127.2-201ENST00000549925 1075 ntBASIC4.86□□□□□ -1.63
SMARCA1P28370 LSM6P2-201ENST00000552208 177 ntBASIC4.86□□□□□ -1.63
SMARCA1P28370 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC4.86□□□□□ -1.63
SMARCA1P28370 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC4.86□□□□□ -1.63
SMARCA1P28370 RN7SL600P-201ENST00000581811 299 ntBASIC4.86□□□□□ -1.63
SMARCA1P28370 MAGOH2P-202ENST00000584384 429 ntBASIC4.86□□□□□ -1.63
SMARCA1P28370 AC083760.1-201ENST00000589621 670 ntBASIC4.86□□□□□ -1.63
SMARCA1P28370 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC4.86□□□□□ -1.63
SMARCA1P28370 AC010680.4-201ENST00000605334 543 ntBASIC4.86□□□□□ -1.63
SMARCA1P28370 Z99129.1-201ENST00000612510 255 ntBASIC4.86□□□□□ -1.63
SMARCA1P28370 AC015540.1-201ENST00000615828 501 ntBASIC4.86□□□□□ -1.63
SMARCA1P28370 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC4.86□□□□□ -1.63
SMARCA1P28370 AL356121.2-201ENST00000624715 780 ntBASIC4.86□□□□□ -1.63
SMARCA1P28370 MIR4496-201ENST00000635896 61 ntBASIC4.86□□□□□ -1.63
SMARCA1P28370 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SMARCA1P28370 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC4.86□□□□□ -1.63
SMARCA1P28370 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
SMARCA1P28370 AL356473.1-201ENST00000406203 1408 ntBASIC4.86□□□□□ -1.63
SMARCA1P28370 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SMARCA1P28370 HSP90AA5P-201ENST00000438353 2192 ntBASIC4.85□□□□□ -1.63
SMARCA1P28370 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.85□□□□□ -1.63
SMARCA1P28370 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SMARCA1P28370 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.85□□□□□ -1.63
SMARCA1P28370 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC4.85□□□□□ -1.63
SMARCA1P28370 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SMARCA1P28370 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC4.85□□□□□ -1.63
SMARCA1P28370 RNU5F-7P-201ENST00000363696 115 ntBASIC4.85□□□□□ -1.63
SMARCA1P28370 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
SMARCA1P28370 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC4.85□□□□□ -1.63
SMARCA1P28370 ENSAP1-201ENST00000392855 326 ntBASIC4.85□□□□□ -1.63
SMARCA1P28370 RPL23AP48-201ENST00000406913 488 ntBASIC4.85□□□□□ -1.63
SMARCA1P28370 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SMARCA1P28370 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SMARCA1P28370 AC069218.2-201ENST00000411665 344 ntBASIC4.85□□□□□ -1.63
SMARCA1P28370 AC109780.2-201ENST00000413467 845 ntBASIC4.85□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms