Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AC019227.1-201ENST00000526902 510 ntBASIC3.48□□□□□ -1.85
SDC3O75056 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC3.48□□□□□ -1.85
SDC3O75056 DEFB130C-202ENST00000530001 230 ntBASIC3.48□□□□□ -1.85
SDC3O75056 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC3.48□□□□□ -1.85
SDC3O75056 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
SDC3O75056 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC3.48□□□□□ -1.85
SDC3O75056 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.48□□□□□ -1.85
SDC3O75056 AC011471.1-201ENST00000585766 187 ntBASIC3.48□□□□□ -1.85
SDC3O75056 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC3.48□□□□□ -1.85
SDC3O75056 AL022067.1-201ENST00000602426 454 ntBASIC3.48□□□□□ -1.85
SDC3O75056 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.48□□□□□ -1.85
SDC3O75056 BRDTP1-201ENST00000605735 677 ntBASIC3.48□□□□□ -1.85
SDC3O75056 AC090116.1-201ENST00000615679 446 ntBASIC3.48□□□□□ -1.85
SDC3O75056 AC018816.2-201ENST00000621460 353 ntBASIC3.48□□□□□ -1.85
SDC3O75056 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.48□□□□□ -1.85
SDC3O75056 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.48□□□□□ -1.85
SDC3O75056 OTUD4P1-201ENST00000237841 3067 ntBASIC3.48□□□□□ -1.85
SDC3O75056 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC3.48□□□□□ -1.85
SDC3O75056 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.48□□□□□ -1.85
SDC3O75056 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
SDC3O75056 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.47□□□□□ -1.85
SDC3O75056 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
SDC3O75056 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC3.47□□□□□ -1.85
SDC3O75056 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.47□□□□□ -1.85
SDC3O75056 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.47□□□□□ -1.85
SDC3O75056 TAS2R10-201ENST00000240619 1042 ntAPPRIS P1 BASIC3.47□□□□□ -1.85
SDC3O75056 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC3.47□□□□□ -1.85
SDC3O75056 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
SDC3O75056 RNU5E-10P-201ENST00000363506 118 ntBASIC3.47□□□□□ -1.85
SDC3O75056 RNU6-115P-201ENST00000364310 107 ntBASIC3.47□□□□□ -1.85
SDC3O75056 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC3.47□□□□□ -1.85
SDC3O75056 RNU6-1181P-201ENST00000384191 106 ntBASIC3.47□□□□□ -1.85
SDC3O75056 MIR217-201ENST00000384817 110 ntBASIC3.47□□□□□ -1.85
SDC3O75056 MIR128-1-201ENST00000384921 82 ntBASIC3.47□□□□□ -1.85
SDC3O75056 SNORA48.2-201ENST00000390926 124 ntBASIC3.47□□□□□ -1.85
SDC3O75056 SNORD17-201ENST00000390930 237 ntBASIC3.47□□□□□ -1.85
SDC3O75056 NDUFB4P4-201ENST00000404822 243 ntBASIC3.47□□□□□ -1.85
SDC3O75056 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC3.47□□□□□ -1.85
SDC3O75056 AC127526.1-201ENST00000417526 366 ntBASIC3.47□□□□□ -1.85
SDC3O75056 MTND4P3-201ENST00000417829 541 ntBASIC3.47□□□□□ -1.85
SDC3O75056 HSFY1P1-201ENST00000423928 1178 ntBASIC3.47□□□□□ -1.85
SDC3O75056 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC3.47□□□□□ -1.85
SDC3O75056 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC3.47□□□□□ -1.85
SDC3O75056 ARF4P2-201ENST00000430209 526 ntBASIC3.47□□□□□ -1.85
SDC3O75056 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.47□□□□□ -1.85
SDC3O75056 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC3.47□□□□□ -1.85
SDC3O75056 AC005019.1-201ENST00000436455 431 ntBASIC3.47□□□□□ -1.85
SDC3O75056 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.47□□□□□ -1.85
SDC3O75056 RPL23AP62-201ENST00000463396 453 ntBASIC3.47□□□□□ -1.85
SDC3O75056 SNRPGP3-201ENST00000469405 227 ntBASIC3.47□□□□□ -1.85
SDC3O75056 AC017015.1-201ENST00000477387 286 ntBASIC3.47□□□□□ -1.85
SDC3O75056 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC3.47□□□□□ -1.85
SDC3O75056 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
SDC3O75056 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC3.47□□□□□ -1.85
SDC3O75056 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.47□□□□□ -1.85
SDC3O75056 RNU6-1073P-201ENST00000517182 106 ntBASIC3.47□□□□□ -1.85
SDC3O75056 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC3.47□□□□□ -1.85
SDC3O75056 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
SDC3O75056 AC044913.1-201ENST00000557200 430 ntBASIC3.47□□□□□ -1.85
SDC3O75056 AC106782.4-201ENST00000568264 210 ntBASIC3.47□□□□□ -1.85
SDC3O75056 AL669831.4-202ENST00000590817 238 ntBASIC3.47□□□□□ -1.85
SDC3O75056 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.47□□□□□ -1.85
SDC3O75056 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC3.47□□□□□ -1.85
SDC3O75056 AC022146.1-201ENST00000595307 847 ntBASIC3.47□□□□□ -1.85
SDC3O75056 VN1R92P-201ENST00000598511 928 ntBASIC3.47□□□□□ -1.85
SDC3O75056 GAS5-AS1-201ENST00000602767 694 ntBASIC3.47□□□□□ -1.85
SDC3O75056 DPRXP5-201ENST00000604662 539 ntBASIC3.47□□□□□ -1.85
SDC3O75056 AC024060.1-201ENST00000607052 494 ntBASIC3.47□□□□□ -1.85
SDC3O75056 AL592148.2-201ENST00000612210 372 ntBASIC3.47□□□□□ -1.85
SDC3O75056 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
SDC3O75056 AC009269.6-201ENST00000621778 588 ntBASIC3.47□□□□□ -1.85
SDC3O75056 AL732618.1-201ENST00000623251 301 ntBASIC3.47□□□□□ -1.85
SDC3O75056 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
SDC3O75056 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC3.47□□□□□ -1.85
SDC3O75056 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.47□□□□□ -1.85
SDC3O75056 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.47□□□□□ -1.85
SDC3O75056 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC3.47□□□□□ -1.85
SDC3O75056 AP001350.1-201ENST00000601906 1524 ntBASIC3.46□□□□□ -1.86
SDC3O75056 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
SDC3O75056 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
SDC3O75056 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC3.46□□□□□ -1.86
SDC3O75056 FRG1CP-201ENST00000358464 769 ntBASIC3.46□□□□□ -1.86
SDC3O75056 RNU6-582P-201ENST00000362989 107 ntBASIC3.46□□□□□ -1.86
SDC3O75056 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC3.46□□□□□ -1.86
SDC3O75056 RNU6-629P-201ENST00000384061 103 ntBASIC3.46□□□□□ -1.86
SDC3O75056 AL079342.2-201ENST00000403367 482 ntBASIC3.46□□□□□ -1.86
SDC3O75056 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.46□□□□□ -1.86
SDC3O75056 RNA5SP56-201ENST00000410277 118 ntBASIC3.46□□□□□ -1.86
SDC3O75056 OR4K6P-201ENST00000416478 897 ntBASIC3.46□□□□□ -1.86
SDC3O75056 Z93242.1-201ENST00000427102 353 ntBASIC3.46□□□□□ -1.86
SDC3O75056 VDAC1P3-201ENST00000434069 851 ntBASIC3.46□□□□□ -1.86
SDC3O75056 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC3.46□□□□□ -1.86
SDC3O75056 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.46□□□□□ -1.86
SDC3O75056 AC104073.1-201ENST00000451988 151 ntBASIC3.46□□□□□ -1.86
SDC3O75056 U3.44-201ENST00000458938 192 ntBASIC3.46□□□□□ -1.86
SDC3O75056 snoU13.3-201ENST00000459441 104 ntBASIC3.46□□□□□ -1.86
SDC3O75056 ARL2BPP5-201ENST00000523141 481 ntBASIC3.46□□□□□ -1.86
SDC3O75056 AP000790.1-201ENST00000528891 737 ntBASIC3.46□□□□□ -1.86
SDC3O75056 PDCL2P2-201ENST00000533651 189 ntBASIC3.46□□□□□ -1.86
SDC3O75056 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC3.46□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 78.9 ms