Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC126118.1-201ENST00000607744 628 ntBASIC3.67□□□□□ -1.82
LMX1BO60663 AP001521.1-201ENST00000609150 300 ntBASIC3.67□□□□□ -1.82
LMX1BO60663 AC243654.2-201ENST00000612843 443 ntBASIC3.67□□□□□ -1.82
LMX1BO60663 AC009237.17-201ENST00000618111 748 ntBASIC3.67□□□□□ -1.82
LMX1BO60663 AC079228.1-201ENST00000624774 1049 ntBASIC3.67□□□□□ -1.82
LMX1BO60663 AC022031.1-201ENST00000585985 2593 ntBASIC3.67□□□□□ -1.82
LMX1BO60663 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
LMX1BO60663 EED-206ENST00000527888 1422 ntTSL 2 BASIC3.67□□□□□ -1.82
LMX1BO60663 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC3.67□□□□□ -1.82
LMX1BO60663 OR5BR1P-201ENST00000524992 1330 ntBASIC3.67□□□□□ -1.82
LMX1BO60663 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
LMX1BO60663 AP001486.2-201ENST00000561652 5113 ntBASIC3.66□□□□□ -1.82
LMX1BO60663 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
LMX1BO60663 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC3.66□□□□□ -1.82
LMX1BO60663 ASNSP1-201ENST00000518311 1939 ntBASIC3.66□□□□□ -1.82
LMX1BO60663 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
LMX1BO60663 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
LMX1BO60663 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
LMX1BO60663 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
LMX1BO60663 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
LMX1BO60663 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
LMX1BO60663 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
LMX1BO60663 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC3.66□□□□□ -1.82
LMX1BO60663 SNRPEP3-201ENST00000338402 276 ntBASIC3.66□□□□□ -1.82
LMX1BO60663 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
LMX1BO60663 Y_RNA.25-201ENST00000362528 102 ntBASIC3.66□□□□□ -1.82
LMX1BO60663 RNU6-501P-201ENST00000364072 100 ntBASIC3.66□□□□□ -1.82
LMX1BO60663 RNU6-115P-201ENST00000364310 107 ntBASIC3.66□□□□□ -1.82
LMX1BO60663 SNORA62.3-201ENST00000365110 153 ntBASIC3.66□□□□□ -1.82
LMX1BO60663 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC3.66□□□□□ -1.82
LMX1BO60663 MIR554-201ENST00000384874 96 ntBASIC3.66□□□□□ -1.82
LMX1BO60663 SLC9B1P2-201ENST00000398120 1184 ntBASIC3.66□□□□□ -1.82
LMX1BO60663 PPIAP31-201ENST00000405422 495 ntBASIC3.66□□□□□ -1.82
LMX1BO60663 SNORA11F-201ENST00000408237 128 ntBASIC3.66□□□□□ -1.82
LMX1BO60663 MTCO3P1-205ENST00000422088 832 ntBASIC3.66□□□□□ -1.82
LMX1BO60663 MTND4LP11-201ENST00000422184 280 ntBASIC3.66□□□□□ -1.82
LMX1BO60663 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC3.66□□□□□ -1.82
LMX1BO60663 AL953862.1-201ENST00000423016 168 ntBASIC3.66□□□□□ -1.82
LMX1BO60663 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC3.66□□□□□ -1.82
LMX1BO60663 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
LMX1BO60663 AL157831.1-201ENST00000426134 473 ntBASIC3.66□□□□□ -1.82
LMX1BO60663 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC3.66□□□□□ -1.82
LMX1BO60663 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC3.66□□□□□ -1.82
LMX1BO60663 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC3.66□□□□□ -1.82
LMX1BO60663 AC069285.2-201ENST00000440210 275 ntBASIC3.66□□□□□ -1.82
LMX1BO60663 AL353748.1-201ENST00000440753 474 ntBASIC3.66□□□□□ -1.82
LMX1BO60663 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
LMX1BO60663 RPL26P28-201ENST00000451325 435 ntBASIC3.66□□□□□ -1.82
LMX1BO60663 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC3.66□□□□□ -1.82
LMX1BO60663 RPS15AP1-201ENST00000457423 391 ntBASIC3.66□□□□□ -1.82
LMX1BO60663 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC3.66□□□□□ -1.82
LMX1BO60663 AC034236.1-201ENST00000469891 373 ntBASIC3.66□□□□□ -1.82
LMX1BO60663 RPS29P19-201ENST00000479709 171 ntBASIC3.66□□□□□ -1.82
LMX1BO60663 AC041039.1-201ENST00000485656 536 ntBASIC3.66□□□□□ -1.82
LMX1BO60663 AP002812.1-201ENST00000495378 474 ntBASIC3.66□□□□□ -1.82
LMX1BO60663 AC017037.1-201ENST00000508460 471 ntBASIC3.66□□□□□ -1.82
LMX1BO60663 KRT19P6-201ENST00000510983 209 ntBASIC3.66□□□□□ -1.82
LMX1BO60663 RNU6-583P-201ENST00000516012 92 ntBASIC3.66□□□□□ -1.82
LMX1BO60663 OR5M7P-201ENST00000526140 972 ntBASIC3.66□□□□□ -1.82
LMX1BO60663 AP003392.2-201ENST00000527269 208 ntBASIC3.66□□□□□ -1.82
LMX1BO60663 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC3.66□□□□□ -1.82
LMX1BO60663 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC3.66□□□□□ -1.82
LMX1BO60663 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC3.66□□□□□ -1.82
LMX1BO60663 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC3.66□□□□□ -1.82
LMX1BO60663 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC3.66□□□□□ -1.82
LMX1BO60663 PCMTD1P2-201ENST00000565017 355 ntBASIC3.66□□□□□ -1.82
LMX1BO60663 AC091489.2-201ENST00000566263 604 ntBASIC3.66□□□□□ -1.82
LMX1BO60663 AC090312.1-201ENST00000580637 348 ntBASIC3.66□□□□□ -1.82
LMX1BO60663 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC3.66□□□□□ -1.82
LMX1BO60663 AC006130.2-201ENST00000586202 326 ntBASIC3.66□□□□□ -1.82
LMX1BO60663 AC115085.1-201ENST00000588924 229 ntBASIC3.66□□□□□ -1.82
LMX1BO60663 AP000403.1-201ENST00000603349 851 ntBASIC3.66□□□□□ -1.82
LMX1BO60663 AC091488.1-201ENST00000604239 660 ntBASIC3.66□□□□□ -1.82
LMX1BO60663 AC007684.1-201ENST00000609671 477 ntBASIC3.66□□□□□ -1.82
LMX1BO60663 AL589743.7-201ENST00000612637 233 ntBASIC3.66□□□□□ -1.82
LMX1BO60663 AC025588.4-201ENST00000615802 908 ntBASIC3.66□□□□□ -1.82
LMX1BO60663 AL356596.1-201ENST00000624230 379 ntBASIC3.66□□□□□ -1.82
LMX1BO60663 AL603839.4-201ENST00000624658 1005 ntBASIC3.66□□□□□ -1.82
LMX1BO60663 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC3.66□□□□□ -1.82
LMX1BO60663 AC099654.12-201ENST00000639868 649 ntBASIC3.66□□□□□ -1.82
LMX1BO60663 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
LMX1BO60663 ANKRD36BP1-202ENST00000604892 1417 ntBASIC3.66□□□□□ -1.82
LMX1BO60663 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC3.66□□□□□ -1.82
LMX1BO60663 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC3.66□□□□□ -1.82
LMX1BO60663 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
LMX1BO60663 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC3.66□□□□□ -1.82
LMX1BO60663 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
LMX1BO60663 KPNA2P2-201ENST00000419546 1489 ntBASIC3.66□□□□□ -1.82
LMX1BO60663 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
LMX1BO60663 MTND4P16-201ENST00000466108 1367 ntBASIC3.65□□□□□ -1.82
LMX1BO60663 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
LMX1BO60663 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC3.65□□□□□ -1.82
LMX1BO60663 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC3.65□□□□□ -1.82
LMX1BO60663 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC3.65□□□□□ -1.82
LMX1BO60663 AC022893.2-201ENST00000564832 3296 ntBASIC3.65□□□□□ -1.82
LMX1BO60663 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.82
LMX1BO60663 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
LMX1BO60663 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC3.65□□□□□ -1.82
LMX1BO60663 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
LMX1BO60663 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 95.2 ms