Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC4.31□□□□□ -1.72
HOXA3O43365 OR1AA1P-201ENST00000419597 916 ntBASIC4.31□□□□□ -1.72
HOXA3O43365 CHIAP3-201ENST00000423668 1133 ntBASIC4.31□□□□□ -1.72
HOXA3O43365 RPL30P3-201ENST00000424262 333 ntBASIC4.31□□□□□ -1.72
HOXA3O43365 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC4.31□□□□□ -1.72
HOXA3O43365 RPL12P18-201ENST00000437175 325 ntBASIC4.31□□□□□ -1.72
HOXA3O43365 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC4.31□□□□□ -1.72
HOXA3O43365 GAPDHP25-201ENST00000447061 1001 ntBASIC4.31□□□□□ -1.72
HOXA3O43365 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC4.31□□□□□ -1.72
HOXA3O43365 AL121877.1-201ENST00000453704 622 ntBASIC4.31□□□□□ -1.72
HOXA3O43365 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC4.31□□□□□ -1.72
HOXA3O43365 RNU7-59P-201ENST00000459101 61 ntBASIC4.31□□□□□ -1.72
HOXA3O43365 RPL35AP28-201ENST00000459730 331 ntBASIC4.31□□□□□ -1.72
HOXA3O43365 RN7SL197P-201ENST00000466981 299 ntBASIC4.31□□□□□ -1.72
HOXA3O43365 HMGN1P10-201ENST00000474557 553 ntBASIC4.31□□□□□ -1.72
HOXA3O43365 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC4.31□□□□□ -1.72
HOXA3O43365 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC4.31□□□□□ -1.72
HOXA3O43365 AC004062.1-201ENST00000509926 645 ntBASIC4.31□□□□□ -1.72
HOXA3O43365 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC4.31□□□□□ -1.72
HOXA3O43365 AC005798.1-201ENST00000513715 387 ntBASIC4.31□□□□□ -1.72
HOXA3O43365 RNU4-49P-201ENST00000516080 140 ntBASIC4.31□□□□□ -1.72
HOXA3O43365 RNA5SP228-201ENST00000516232 133 ntBASIC4.31□□□□□ -1.72
HOXA3O43365 FTH1P11-201ENST00000517577 551 ntBASIC4.31□□□□□ -1.72
HOXA3O43365 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC4.31□□□□□ -1.72
HOXA3O43365 HMGB1P41-201ENST00000520234 440 ntBASIC4.31□□□□□ -1.72
HOXA3O43365 SUMO2P20-201ENST00000520803 283 ntBASIC4.31□□□□□ -1.72
HOXA3O43365 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC4.31□□□□□ -1.72
HOXA3O43365 AP000676.2-201ENST00000529711 301 ntBASIC4.31□□□□□ -1.72
HOXA3O43365 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC4.31□□□□□ -1.72
HOXA3O43365 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC4.31□□□□□ -1.72
HOXA3O43365 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC4.31□□□□□ -1.72
HOXA3O43365 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC4.31□□□□□ -1.72
HOXA3O43365 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC4.31□□□□□ -1.72
HOXA3O43365 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC4.31□□□□□ -1.72
HOXA3O43365 AC005668.1-201ENST00000571142 476 ntBASIC4.31□□□□□ -1.72
HOXA3O43365 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC4.31□□□□□ -1.72
HOXA3O43365 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC4.31□□□□□ -1.72
HOXA3O43365 AC005498.1-201ENST00000592125 465 ntBASIC4.31□□□□□ -1.72
HOXA3O43365 AL451044.1-201ENST00000604867 238 ntBASIC4.31□□□□□ -1.72
HOXA3O43365 AC133644.2-201ENST00000608142 540 ntBASIC4.31□□□□□ -1.72
HOXA3O43365 AL031666.3-201ENST00000609320 1006 ntBASIC4.31□□□□□ -1.72
HOXA3O43365 PART1_1.1-201ENST00000611761 217 ntBASIC4.31□□□□□ -1.72
HOXA3O43365 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC4.31□□□□□ -1.72
HOXA3O43365 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC4.31□□□□□ -1.72
HOXA3O43365 ATM-228ENST00000639240 498 ntTSL 5 BASIC4.31□□□□□ -1.72
HOXA3O43365 ATM-230ENST00000640388 578 ntTSL 5 BASIC4.31□□□□□ -1.72
HOXA3O43365 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
HOXA3O43365 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.31□□□□□ -1.72
HOXA3O43365 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC4.31□□□□□ -1.72
HOXA3O43365 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
HOXA3O43365 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
HOXA3O43365 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC4.31□□□□□ -1.72
HOXA3O43365 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.31□□□□□ -1.72
HOXA3O43365 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
HOXA3O43365 ZNF734P-201ENST00000419494 1534 ntBASIC4.31□□□□□ -1.72
HOXA3O43365 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.31□□□□□ -1.72
HOXA3O43365 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC4.3□□□□□ -1.72
HOXA3O43365 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
HOXA3O43365 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
HOXA3O43365 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC4.3□□□□□ -1.72
HOXA3O43365 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
HOXA3O43365 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC4.3□□□□□ -1.72
HOXA3O43365 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC4.3□□□□□ -1.72
HOXA3O43365 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC4.3□□□□□ -1.72
HOXA3O43365 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC4.3□□□□□ -1.72
HOXA3O43365 AL078621.3-201ENST00000623707 2042 ntBASIC4.3□□□□□ -1.72
HOXA3O43365 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
HOXA3O43365 RNU6-511P-201ENST00000363496 107 ntBASIC4.3□□□□□ -1.72
HOXA3O43365 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
HOXA3O43365 AL590004.1-201ENST00000405321 300 ntBASIC4.3□□□□□ -1.72
HOXA3O43365 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC4.3□□□□□ -1.72
HOXA3O43365 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC4.3□□□□□ -1.72
HOXA3O43365 AC079809.1-201ENST00000415468 276 ntBASIC4.3□□□□□ -1.72
HOXA3O43365 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC4.3□□□□□ -1.72
HOXA3O43365 MED13P1-201ENST00000428342 171 ntBASIC4.3□□□□□ -1.72
HOXA3O43365 SAR1AP4-201ENST00000429225 591 ntBASIC4.3□□□□□ -1.72
HOXA3O43365 ERLEC1P1-201ENST00000433806 578 ntBASIC4.3□□□□□ -1.72
HOXA3O43365 AL353597.2-202ENST00000434901 373 ntBASIC4.3□□□□□ -1.72
HOXA3O43365 AC099670.2-201ENST00000435130 321 ntBASIC4.3□□□□□ -1.72
HOXA3O43365 MTND6P18-201ENST00000439477 513 ntBASIC4.3□□□□□ -1.72
HOXA3O43365 CBX1P2-201ENST00000453841 458 ntBASIC4.3□□□□□ -1.72
HOXA3O43365 RNU6-329P-201ENST00000459618 107 ntBASIC4.3□□□□□ -1.72
HOXA3O43365 HMGN2P26-201ENST00000463169 339 ntBASIC4.3□□□□□ -1.72
HOXA3O43365 AC009127.1-201ENST00000467090 155 ntBASIC4.3□□□□□ -1.72
HOXA3O43365 AC053481.1-201ENST00000467217 306 ntBASIC4.3□□□□□ -1.72
HOXA3O43365 RPL7L1P8-201ENST00000469911 741 ntBASIC4.3□□□□□ -1.72
HOXA3O43365 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
HOXA3O43365 RPS4XP20-201ENST00000505751 772 ntBASIC4.3□□□□□ -1.72
HOXA3O43365 AC017037.2-201ENST00000513850 890 ntBASIC4.3□□□□□ -1.72
HOXA3O43365 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC4.3□□□□□ -1.72
HOXA3O43365 RNU4-29P-201ENST00000515943 174 ntBASIC4.3□□□□□ -1.72
HOXA3O43365 RNU4ATAC8P-201ENST00000516196 109 ntBASIC4.3□□□□□ -1.72
HOXA3O43365 RNU6-798P-201ENST00000516912 103 ntBASIC4.3□□□□□ -1.72
HOXA3O43365 MAL2-208ENST00000523307 556 ntTSL 4 BASIC4.3□□□□□ -1.72
HOXA3O43365 OR5B10P-201ENST00000532869 642 ntBASIC4.3□□□□□ -1.72
HOXA3O43365 AL133271.1-201ENST00000538229 291 ntBASIC4.3□□□□□ -1.72
HOXA3O43365 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC4.3□□□□□ -1.72
HOXA3O43365 AC092490.3-201ENST00000545370 572 ntBASIC4.3□□□□□ -1.72
HOXA3O43365 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC4.3□□□□□ -1.72
HOXA3O43365 PYM1-205ENST00000547925 499 ntTSL 3 BASIC4.3□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 105.6 ms