Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 AC233309.1-201ENST00000619522 751 ntBASIC4.76□□□□□ -1.65
NPHP1O15259 AP001002.2-201ENST00000625137 386 ntBASIC4.76□□□□□ -1.65
NPHP1O15259 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC4.76□□□□□ -1.65
NPHP1O15259 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
NPHP1O15259 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC4.76□□□□□ -1.65
NPHP1O15259 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC4.75□□□□□ -1.65
NPHP1O15259 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC4.75□□□□□ -1.65
NPHP1O15259 IDE-202ENST00000371581 4480 ntTSL 2 BASIC4.75□□□□□ -1.65
NPHP1O15259 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC4.75□□□□□ -1.65
NPHP1O15259 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
NPHP1O15259 SNORA31-201ENST00000362607 130 ntBASIC4.75□□□□□ -1.65
NPHP1O15259 RNU6-560P-201ENST00000364007 108 ntBASIC4.75□□□□□ -1.65
NPHP1O15259 SNORA7.2-201ENST00000364446 145 ntBASIC4.75□□□□□ -1.65
NPHP1O15259 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC4.75□□□□□ -1.65
NPHP1O15259 AL590084.1-201ENST00000407885 387 ntBASIC4.75□□□□□ -1.65
NPHP1O15259 SNORA11.2-201ENST00000408318 127 ntBASIC4.75□□□□□ -1.65
NPHP1O15259 RNA5SP80-201ENST00000410475 111 ntBASIC4.75□□□□□ -1.65
NPHP1O15259 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC4.75□□□□□ -1.65
NPHP1O15259 RPS7P15-201ENST00000415804 584 ntBASIC4.75□□□□□ -1.65
NPHP1O15259 USP9YP31-201ENST00000431405 881 ntBASIC4.75□□□□□ -1.65
NPHP1O15259 AC083863.1-201ENST00000438811 231 ntBASIC4.75□□□□□ -1.65
NPHP1O15259 ELOCP8-201ENST00000439309 332 ntBASIC4.75□□□□□ -1.65
NPHP1O15259 ELOCP15-201ENST00000442090 332 ntBASIC4.75□□□□□ -1.65
NPHP1O15259 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC4.75□□□□□ -1.65
NPHP1O15259 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
NPHP1O15259 SLC31A1P1-201ENST00000451221 567 ntBASIC4.75□□□□□ -1.65
NPHP1O15259 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC4.75□□□□□ -1.65
NPHP1O15259 AC092155.2-201ENST00000454675 477 ntBASIC4.75□□□□□ -1.65
NPHP1O15259 AL133477.1-201ENST00000457472 514 ntBASIC4.75□□□□□ -1.65
NPHP1O15259 RPS20P24-201ENST00000457473 361 ntBASIC4.75□□□□□ -1.65
NPHP1O15259 RN7SL585P-201ENST00000470538 280 ntBASIC4.75□□□□□ -1.65
NPHP1O15259 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC4.75□□□□□ -1.65
NPHP1O15259 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC4.75□□□□□ -1.65
NPHP1O15259 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC4.75□□□□□ -1.65
NPHP1O15259 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.75□□□□□ -1.65
NPHP1O15259 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC4.75□□□□□ -1.65
NPHP1O15259 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC4.75□□□□□ -1.65
NPHP1O15259 AP001269.3-201ENST00000588718 329 ntBASIC4.75□□□□□ -1.65
NPHP1O15259 VN1R79P-201ENST00000593540 513 ntBASIC4.75□□□□□ -1.65
NPHP1O15259 AC006329.2-201ENST00000611491 394 ntBASIC4.75□□□□□ -1.65
NPHP1O15259 RMST_9.1-201ENST00000619945 193 ntBASIC4.75□□□□□ -1.65
NPHP1O15259 AC092650.2-201ENST00000619984 902 ntBASIC4.75□□□□□ -1.65
NPHP1O15259 ABBA01000935.2-201ENST00000637477 838 ntBASIC4.75□□□□□ -1.65
NPHP1O15259 AL392088.2-201ENST00000637607 285 ntBASIC4.75□□□□□ -1.65
NPHP1O15259 AC119674.1-207ENST00000641355 633 ntBASIC4.75□□□□□ -1.65
NPHP1O15259 PRO1804-201ENST00000623780 2050 ntBASIC4.75□□□□□ -1.65
NPHP1O15259 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC4.75□□□□□ -1.65
NPHP1O15259 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC4.75□□□□□ -1.65
NPHP1O15259 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
NPHP1O15259 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC4.74□□□□□ -1.65
NPHP1O15259 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC4.74□□□□□ -1.65
NPHP1O15259 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC4.74□□□□□ -1.65
NPHP1O15259 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.74□□□□□ -1.65
NPHP1O15259 RNA5SP189-201ENST00000364920 115 ntBASIC4.74□□□□□ -1.65
NPHP1O15259 SNORD116.1-201ENST00000365628 92 ntBASIC4.74□□□□□ -1.65
NPHP1O15259 RNU6-906P-201ENST00000384700 70 ntBASIC4.74□□□□□ -1.65
NPHP1O15259 AL138880.1-201ENST00000405824 642 ntBASIC4.74□□□□□ -1.65
NPHP1O15259 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC4.74□□□□□ -1.65
NPHP1O15259 AC068533.2-201ENST00000411872 306 ntBASIC4.74□□□□□ -1.65
NPHP1O15259 ATP5A1P2-201ENST00000412323 255 ntBASIC4.74□□□□□ -1.65
NPHP1O15259 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC4.74□□□□□ -1.65
NPHP1O15259 AL391219.1-201ENST00000422570 483 ntBASIC4.74□□□□□ -1.65
NPHP1O15259 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC4.74□□□□□ -1.65
NPHP1O15259 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC4.74□□□□□ -1.65
NPHP1O15259 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC4.74□□□□□ -1.65
NPHP1O15259 RPL21P23-201ENST00000446654 460 ntBASIC4.74□□□□□ -1.65
NPHP1O15259 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
NPHP1O15259 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
NPHP1O15259 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC4.74□□□□□ -1.65
NPHP1O15259 AC017037.1-201ENST00000508460 471 ntBASIC4.74□□□□□ -1.65
NPHP1O15259 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC4.74□□□□□ -1.65
NPHP1O15259 FTH1P9-201ENST00000513251 355 ntBASIC4.74□□□□□ -1.65
NPHP1O15259 IGKV2-38-201ENST00000517443 247 ntBASIC4.74□□□□□ -1.65
NPHP1O15259 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC4.74□□□□□ -1.65
NPHP1O15259 AP004371.1-201ENST00000525240 214 ntBASIC4.74□□□□□ -1.65
NPHP1O15259 SLC2A13P1-201ENST00000531560 322 ntBASIC4.74□□□□□ -1.65
NPHP1O15259 AP004242.1-201ENST00000533701 349 ntBASIC4.74□□□□□ -1.65
NPHP1O15259 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC4.74□□□□□ -1.65
NPHP1O15259 RPL21P12-201ENST00000559810 515 ntBASIC4.74□□□□□ -1.65
NPHP1O15259 BNIP3P24-201ENST00000593398 557 ntBASIC4.74□□□□□ -1.65
NPHP1O15259 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC4.74□□□□□ -1.65
NPHP1O15259 BNIP3P26-201ENST00000600827 554 ntBASIC4.74□□□□□ -1.65
NPHP1O15259 AC068790.5-201ENST00000602741 355 ntBASIC4.74□□□□□ -1.65
NPHP1O15259 AC069304.2-201ENST00000605154 435 ntBASIC4.74□□□□□ -1.65
NPHP1O15259 AC040168.1-201ENST00000623594 991 ntBASIC4.74□□□□□ -1.65
NPHP1O15259 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC4.74□□□□□ -1.65
NPHP1O15259 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC4.74□□□□□ -1.65
NPHP1O15259 AL773545.4-201ENST00000637262 310 ntBASIC4.74□□□□□ -1.65
NPHP1O15259 U6.101-201ENST00000637707 76 ntBASIC4.74□□□□□ -1.65
NPHP1O15259 AL513478.4-201ENST00000641636 310 ntBASIC4.74□□□□□ -1.65
NPHP1O15259 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
NPHP1O15259 AC018555.1-201ENST00000567548 1980 ntBASIC4.74□□□□□ -1.65
NPHP1O15259 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
NPHP1O15259 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
NPHP1O15259 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
NPHP1O15259 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
NPHP1O15259 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
NPHP1O15259 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC4.73□□□□□ -1.65
NPHP1O15259 RNA5SP258-201ENST00000362750 119 ntBASIC4.73□□□□□ -1.65
NPHP1O15259 MIR199A2-201ENST00000385289 110 ntBASIC4.73□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 90.2 ms