Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 BANK1-206ENST00000504592 3544 ntTSL 2 BASIC8.15□□□□□ -1.11
CCDC61Q9Y6R9 BIRC3-207ENST00000615299 4342 ntAPPRIS P1 TSL 5 BASIC8.15□□□□□ -1.11
CCDC61Q9Y6R9 AC092724.1-201ENST00000624623 3397 ntBASIC8.14□□□□□ -1.11
CCDC61Q9Y6R9 LRP2-201ENST00000263816 15808 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
CCDC61Q9Y6R9 CPEB4-201ENST00000265085 9483 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
CCDC61Q9Y6R9 ELMOD2-201ENST00000323570 4409 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
CCDC61Q9Y6R9 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC8.14□□□□□ -1.11
CCDC61Q9Y6R9 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC8.14□□□□□ -1.11
CCDC61Q9Y6R9 ITPR1-205ENST00000456211 9717 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
CCDC61Q9Y6R9 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC8.14□□□□□ -1.11
CCDC61Q9Y6R9 RGS4-203ENST00000367909 3200 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
CCDC61Q9Y6R9 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
CCDC61Q9Y6R9 Y_RNA.458-201ENST00000384240 102 ntBASIC8.14□□□□□ -1.11
CCDC61Q9Y6R9 Y_RNA.541-201ENST00000384640 113 ntBASIC8.14□□□□□ -1.11
CCDC61Q9Y6R9 AP003170.5-201ENST00000397185 335 ntBASIC8.14□□□□□ -1.11
CCDC61Q9Y6R9 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC8.14□□□□□ -1.11
CCDC61Q9Y6R9 RNU6-1135P-201ENST00000411083 103 ntBASIC8.14□□□□□ -1.11
CCDC61Q9Y6R9 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC8.14□□□□□ -1.11
CCDC61Q9Y6R9 AC007098.1-201ENST00000420122 367 ntBASIC8.14□□□□□ -1.11
CCDC61Q9Y6R9 HMGB3P24-201ENST00000433260 622 ntBASIC8.14□□□□□ -1.11
CCDC61Q9Y6R9 AL451136.1-201ENST00000435399 325 ntBASIC8.14□□□□□ -1.11
CCDC61Q9Y6R9 CBX1P4-201ENST00000439415 457 ntBASIC8.14□□□□□ -1.11
CCDC61Q9Y6R9 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC8.14□□□□□ -1.11
CCDC61Q9Y6R9 DAP3P1-201ENST00000441522 278 ntBASIC8.14□□□□□ -1.11
CCDC61Q9Y6R9 NDUFB4P9-201ENST00000511646 388 ntBASIC8.14□□□□□ -1.11
CCDC61Q9Y6R9 RNU6-615P-201ENST00000516065 106 ntBASIC8.14□□□□□ -1.11
CCDC61Q9Y6R9 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC8.14□□□□□ -1.11
CCDC61Q9Y6R9 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC8.14□□□□□ -1.11
CCDC61Q9Y6R9 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC8.14□□□□□ -1.11
CCDC61Q9Y6R9 HOTTIP_3.1-201ENST00000619957 337 ntBASIC8.14□□□□□ -1.11
CCDC61Q9Y6R9 AC069234.4-201ENST00000621276 412 ntBASIC8.14□□□□□ -1.11
CCDC61Q9Y6R9 LCP1-201ENST00000323076 3787 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
CCDC61Q9Y6R9 ADA2-206ENST00000449907 4278 ntAPPRIS ALT2 TSL 2 BASIC8.14□□□□□ -1.11
CCDC61Q9Y6R9 NFIA-204ENST00000371187 2683 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
CCDC61Q9Y6R9 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC8.14□□□□□ -1.11
CCDC61Q9Y6R9 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
CCDC61Q9Y6R9 AC092821.2-201ENST00000545710 2042 ntBASIC8.13□□□□□ -1.11
CCDC61Q9Y6R9 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC8.13□□□□□ -1.11
CCDC61Q9Y6R9 SUPT20H-224ENST00000542180 2478 ntAPPRIS ALT2 TSL 5 BASIC8.13□□□□□ -1.11
CCDC61Q9Y6R9 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC8.13□□□□□ -1.11
CCDC61Q9Y6R9 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC8.13□□□□□ -1.11
CCDC61Q9Y6R9 EOGT-210ENST00000615922 1931 ntBASIC8.13□□□□□ -1.11
CCDC61Q9Y6R9 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC8.13□□□□□ -1.11
CCDC61Q9Y6R9 DNAJC15-201ENST00000379221 7853 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
CCDC61Q9Y6R9 LINC00702-203ENST00000608792 6300 ntTSL 4 BASIC8.13□□□□□ -1.11
CCDC61Q9Y6R9 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
CCDC61Q9Y6R9 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC8.13□□□□□ -1.11
CCDC61Q9Y6R9 AL445437.1-201ENST00000623157 3087 ntBASIC8.13□□□□□ -1.11
CCDC61Q9Y6R9 IRF5P1-201ENST00000504852 2164 ntBASIC8.13□□□□□ -1.11
CCDC61Q9Y6R9 SORBS1-203ENST00000354106 3015 ntAPPRIS ALT2 TSL 5 BASIC8.13□□□□□ -1.11
CCDC61Q9Y6R9 AC087516.2-201ENST00000558963 3042 ntTSL 3 BASIC8.13□□□□□ -1.11
CCDC61Q9Y6R9 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
CCDC61Q9Y6R9 XIAPP3-201ENST00000312918 795 ntBASIC8.13□□□□□ -1.11
CCDC61Q9Y6R9 RNU6-715P-201ENST00000365204 103 ntBASIC8.13□□□□□ -1.11
CCDC61Q9Y6R9 RNA5SP211-201ENST00000365516 117 ntBASIC8.13□□□□□ -1.11
CCDC61Q9Y6R9 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC8.13□□□□□ -1.11
CCDC61Q9Y6R9 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC8.13□□□□□ -1.11
CCDC61Q9Y6R9 RPS12P17-201ENST00000438591 377 ntBASIC8.13□□□□□ -1.11
CCDC61Q9Y6R9 EEF1B2P6-201ENST00000445713 673 ntBASIC8.13□□□□□ -1.11
CCDC61Q9Y6R9 OARD1-211ENST00000480585 829 ntTSL 3 BASIC8.13□□□□□ -1.11
CCDC61Q9Y6R9 AL139099.1-201ENST00000497398 403 ntBASIC8.13□□□□□ -1.11
CCDC61Q9Y6R9 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC8.13□□□□□ -1.11
CCDC61Q9Y6R9 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC8.13□□□□□ -1.11
CCDC61Q9Y6R9 HMGB1P42-201ENST00000532126 553 ntBASIC8.13□□□□□ -1.11
CCDC61Q9Y6R9 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC8.13□□□□□ -1.11
CCDC61Q9Y6R9 IGBP1P1-201ENST00000554337 1009 ntBASIC8.13□□□□□ -1.11
CCDC61Q9Y6R9 AC007494.1-201ENST00000562293 760 ntBASIC8.13□□□□□ -1.11
CCDC61Q9Y6R9 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC8.13□□□□□ -1.11
CCDC61Q9Y6R9 MIR1273E-201ENST00000581165 102 ntBASIC8.13□□□□□ -1.11
CCDC61Q9Y6R9 SUMO2P15-201ENST00000604285 278 ntBASIC8.13□□□□□ -1.11
CCDC61Q9Y6R9 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
CCDC61Q9Y6R9 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
CCDC61Q9Y6R9 OR52I2-203ENST00000641896 6591 ntAPPRIS ALT2 BASIC8.13□□□□□ -1.11
CCDC61Q9Y6R9 RAPGEF4-204ENST00000409036 3975 ntTSL 5 BASIC8.13□□□□□ -1.11
CCDC61Q9Y6R9 NPHP1-203ENST00000393272 2752 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
CCDC61Q9Y6R9 NREP-206ENST00000447165 2304 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
CCDC61Q9Y6R9 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC8.13□□□□□ -1.11
CCDC61Q9Y6R9 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC8.13□□□□□ -1.11
CCDC61Q9Y6R9 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
CCDC61Q9Y6R9 FOXJ3-209ENST00000545068 5165 ntAPPRIS P3 TSL 5 BASIC8.13□□□□□ -1.11
CCDC61Q9Y6R9 FOXM1-202ENST00000359843 3315 ntAPPRIS P4 TSL 1 (best) BASIC8.13□□□□□ -1.11
CCDC61Q9Y6R9 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
CCDC61Q9Y6R9 HSPA8P14-201ENST00000552265 1805 ntBASIC8.13□□□□□ -1.11
CCDC61Q9Y6R9 OR2G6-202ENST00000641501 5840 ntAPPRIS P1 BASIC8.12□□□□□ -1.11
CCDC61Q9Y6R9 GABPAP-201ENST00000419271 1356 ntBASIC8.12□□□□□ -1.11
CCDC61Q9Y6R9 ACSL5-203ENST00000356116 3353 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
CCDC61Q9Y6R9 NOX4-214ENST00000532825 2039 ntTSL 2 BASIC8.12□□□□□ -1.11
CCDC61Q9Y6R9 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC8.12□□□□□ -1.11
CCDC61Q9Y6R9 MDM4-205ENST00000391947 10008 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
CCDC61Q9Y6R9 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC8.12□□□□□ -1.11
CCDC61Q9Y6R9 RNU6-1255P-201ENST00000363434 112 ntBASIC8.12□□□□□ -1.11
CCDC61Q9Y6R9 RNU6-790P-201ENST00000384479 105 ntBASIC8.12□□□□□ -1.11
CCDC61Q9Y6R9 Y_RNA.581-201ENST00000391017 97 ntBASIC8.12□□□□□ -1.11
CCDC61Q9Y6R9 MYL6P5-201ENST00000412707 459 ntBASIC8.12□□□□□ -1.11
CCDC61Q9Y6R9 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC8.12□□□□□ -1.11
CCDC61Q9Y6R9 AC007389.2-201ENST00000434630 306 ntBASIC8.12□□□□□ -1.11
CCDC61Q9Y6R9 AC093414.1-201ENST00000434712 514 ntBASIC8.12□□□□□ -1.11
CCDC61Q9Y6R9 LINC01952-202ENST00000450016 281 ntTSL 3 BASIC8.12□□□□□ -1.11
CCDC61Q9Y6R9 AC239809.1-201ENST00000450470 217 ntBASIC8.12□□□□□ -1.11
CCDC61Q9Y6R9 AC140059.1-201ENST00000489238 361 ntBASIC8.12□□□□□ -1.11
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms