Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC4.34□□□□□ -1.71
VPS4AQ9UN37 AC008782.1-201ENST00000603386 430 ntBASIC4.34□□□□□ -1.71
VPS4AQ9UN37 ARF4P1-201ENST00000605447 541 ntBASIC4.34□□□□□ -1.71
VPS4AQ9UN37 AL139286.2-201ENST00000606838 396 ntBASIC4.34□□□□□ -1.71
VPS4AQ9UN37 AC080013.4-201ENST00000607624 649 ntBASIC4.34□□□□□ -1.71
VPS4AQ9UN37 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC4.34□□□□□ -1.71
VPS4AQ9UN37 Z99129.1-201ENST00000612510 255 ntBASIC4.34□□□□□ -1.71
VPS4AQ9UN37 AC005332.10-201ENST00000612725 619 ntBASIC4.34□□□□□ -1.71
VPS4AQ9UN37 AC091905.2-201ENST00000623143 306 ntBASIC4.34□□□□□ -1.71
VPS4AQ9UN37 AP006248.2-201ENST00000623309 592 ntBASIC4.34□□□□□ -1.71
VPS4AQ9UN37 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC4.34□□□□□ -1.71
VPS4AQ9UN37 AL603839.4-201ENST00000624658 1005 ntBASIC4.34□□□□□ -1.71
VPS4AQ9UN37 AL122126.1-201ENST00000546905 1318 ntBASIC4.34□□□□□ -1.71
VPS4AQ9UN37 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC4.34□□□□□ -1.71
VPS4AQ9UN37 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC4.34□□□□□ -1.71
VPS4AQ9UN37 CARF-203ENST00000414439 2099 ntTSL 2 BASIC4.34□□□□□ -1.71
VPS4AQ9UN37 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC4.34□□□□□ -1.71
VPS4AQ9UN37 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
VPS4AQ9UN37 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.34□□□□□ -1.72
VPS4AQ9UN37 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
VPS4AQ9UN37 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
VPS4AQ9UN37 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
VPS4AQ9UN37 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
VPS4AQ9UN37 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC4.33□□□□□ -1.72
VPS4AQ9UN37 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC4.33□□□□□ -1.72
VPS4AQ9UN37 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC4.33□□□□□ -1.72
VPS4AQ9UN37 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
VPS4AQ9UN37 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
VPS4AQ9UN37 RPL23AP57-201ENST00000332361 466 ntBASIC4.33□□□□□ -1.72
VPS4AQ9UN37 RNU6-777P-201ENST00000364265 104 ntBASIC4.33□□□□□ -1.72
VPS4AQ9UN37 AL024474.1-201ENST00000404655 591 ntBASIC4.33□□□□□ -1.72
VPS4AQ9UN37 MAST4-207ENST00000407621 559 ntTSL 2 BASIC4.33□□□□□ -1.72
VPS4AQ9UN37 OR8G2P-201ENST00000412796 908 ntBASIC4.33□□□□□ -1.72
VPS4AQ9UN37 RPL31P2-201ENST00000413849 377 ntBASIC4.33□□□□□ -1.72
VPS4AQ9UN37 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC4.33□□□□□ -1.72
VPS4AQ9UN37 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC4.33□□□□□ -1.72
VPS4AQ9UN37 B3GALNT1P1-201ENST00000420569 975 ntBASIC4.33□□□□□ -1.72
VPS4AQ9UN37 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
VPS4AQ9UN37 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
VPS4AQ9UN37 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC4.33□□□□□ -1.72
VPS4AQ9UN37 AC109583.1-201ENST00000432156 268 ntBASIC4.33□□□□□ -1.72
VPS4AQ9UN37 RPL37P21-201ENST00000435890 276 ntBASIC4.33□□□□□ -1.72
VPS4AQ9UN37 SNRPEP7-201ENST00000438350 220 ntBASIC4.33□□□□□ -1.72
VPS4AQ9UN37 AL831737.1-201ENST00000441288 271 ntBASIC4.33□□□□□ -1.72
VPS4AQ9UN37 AC114755.5-201ENST00000447760 831 ntBASIC4.33□□□□□ -1.72
VPS4AQ9UN37 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC4.33□□□□□ -1.72
VPS4AQ9UN37 RPL23AP24-201ENST00000458203 385 ntBASIC4.33□□□□□ -1.72
VPS4AQ9UN37 RPS20P21-201ENST00000466859 343 ntBASIC4.33□□□□□ -1.72
VPS4AQ9UN37 AC022034.3-201ENST00000471393 478 ntBASIC4.33□□□□□ -1.72
VPS4AQ9UN37 AC104763.1-201ENST00000475274 360 ntBASIC4.33□□□□□ -1.72
VPS4AQ9UN37 RPL36AP41-201ENST00000493820 306 ntBASIC4.33□□□□□ -1.72
VPS4AQ9UN37 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC4.33□□□□□ -1.72
VPS4AQ9UN37 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC4.33□□□□□ -1.72
VPS4AQ9UN37 MTND2P33-201ENST00000506452 1031 ntBASIC4.33□□□□□ -1.72
VPS4AQ9UN37 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC4.33□□□□□ -1.72
VPS4AQ9UN37 POU5F1P7-201ENST00000508759 541 ntBASIC4.33□□□□□ -1.72
VPS4AQ9UN37 AC016065.2-201ENST00000514530 444 ntBASIC4.33□□□□□ -1.72
VPS4AQ9UN37 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC4.33□□□□□ -1.72
VPS4AQ9UN37 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC4.33□□□□□ -1.72
VPS4AQ9UN37 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC4.33□□□□□ -1.72
VPS4AQ9UN37 AC090151.1-201ENST00000520784 730 ntBASIC4.33□□□□□ -1.72
VPS4AQ9UN37 COX6CP8-201ENST00000522620 226 ntBASIC4.33□□□□□ -1.72
VPS4AQ9UN37 CARD16-203ENST00000525374 503 ntTSL 3 BASIC4.33□□□□□ -1.72
VPS4AQ9UN37 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
VPS4AQ9UN37 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC4.33□□□□□ -1.72
VPS4AQ9UN37 AP004247.1-201ENST00000531556 1289 ntBASIC4.33□□□□□ -1.72
VPS4AQ9UN37 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC4.33□□□□□ -1.72
VPS4AQ9UN37 ARL6IP1P1-201ENST00000545836 610 ntBASIC4.33□□□□□ -1.72
VPS4AQ9UN37 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC4.33□□□□□ -1.72
VPS4AQ9UN37 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC4.33□□□□□ -1.72
VPS4AQ9UN37 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
VPS4AQ9UN37 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC4.33□□□□□ -1.72
VPS4AQ9UN37 AC011477.5-201ENST00000586571 259 ntBASIC4.33□□□□□ -1.72
VPS4AQ9UN37 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC4.33□□□□□ -1.72
VPS4AQ9UN37 IPO5P1-202ENST00000600039 287 ntBASIC4.33□□□□□ -1.72
VPS4AQ9UN37 AL139286.1-201ENST00000604465 483 ntBASIC4.33□□□□□ -1.72
VPS4AQ9UN37 BCRP9-201ENST00000605312 388 ntBASIC4.33□□□□□ -1.72
VPS4AQ9UN37 NDUFA8P1-201ENST00000605525 367 ntBASIC4.33□□□□□ -1.72
VPS4AQ9UN37 AC097468.3-201ENST00000607956 456 ntBASIC4.33□□□□□ -1.72
VPS4AQ9UN37 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC4.33□□□□□ -1.72
VPS4AQ9UN37 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
VPS4AQ9UN37 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
VPS4AQ9UN37 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC4.33□□□□□ -1.72
VPS4AQ9UN37 AC025031.4-201ENST00000621248 3271 ntBASIC4.33□□□□□ -1.72
VPS4AQ9UN37 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC4.33□□□□□ -1.72
VPS4AQ9UN37 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC4.32□□□□□ -1.72
VPS4AQ9UN37 AC108467.2-201ENST00000617640 1597 ntBASIC4.32□□□□□ -1.72
VPS4AQ9UN37 AC006378.2-201ENST00000623178 2476 ntBASIC4.32□□□□□ -1.72
VPS4AQ9UN37 TEX21P-201ENST00000447107 1476 ntBASIC4.32□□□□□ -1.72
VPS4AQ9UN37 EED-206ENST00000527888 1422 ntTSL 2 BASIC4.32□□□□□ -1.72
VPS4AQ9UN37 AL139811.1-201ENST00000424779 2299 ntBASIC4.32□□□□□ -1.72
VPS4AQ9UN37 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
VPS4AQ9UN37 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
VPS4AQ9UN37 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
VPS4AQ9UN37 RNA5SP151-201ENST00000365632 117 ntBASIC4.32□□□□□ -1.72
VPS4AQ9UN37 RNU6-348P-201ENST00000384386 107 ntBASIC4.32□□□□□ -1.72
VPS4AQ9UN37 RPS26P8-201ENST00000393490 348 ntBASIC4.32□□□□□ -1.72
VPS4AQ9UN37 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC4.32□□□□□ -1.72
VPS4AQ9UN37 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
VPS4AQ9UN37 MIR1305-201ENST00000408300 86 ntBASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 291.5 ms