Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 AC005609.4-201ENST00000625071 447 ntBASIC4.38□□□□□ -1.71
VSX1Q9NZR4 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
VSX1Q9NZR4 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
VSX1Q9NZR4 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
VSX1Q9NZR4 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
VSX1Q9NZR4 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
VSX1Q9NZR4 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
VSX1Q9NZR4 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC4.37□□□□□ -1.71
VSX1Q9NZR4 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC4.37□□□□□ -1.71
VSX1Q9NZR4 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
VSX1Q9NZR4 IQCG-201ENST00000265239 2262 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
VSX1Q9NZR4 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC4.37□□□□□ -1.71
VSX1Q9NZR4 AC011155.1-201ENST00000316512 456 ntBASIC4.37□□□□□ -1.71
VSX1Q9NZR4 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
VSX1Q9NZR4 Y_RNA.11-201ENST00000362375 109 ntBASIC4.37□□□□□ -1.71
VSX1Q9NZR4 Y_RNA.89-201ENST00000363031 102 ntBASIC4.37□□□□□ -1.71
VSX1Q9NZR4 RNU6-181P-201ENST00000363225 107 ntBASIC4.37□□□□□ -1.71
VSX1Q9NZR4 RNY1P12-201ENST00000364251 105 ntBASIC4.37□□□□□ -1.71
VSX1Q9NZR4 RNU6-1322P-201ENST00000364309 107 ntBASIC4.37□□□□□ -1.71
VSX1Q9NZR4 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
VSX1Q9NZR4 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC4.37□□□□□ -1.71
VSX1Q9NZR4 RPL31P1-201ENST00000398116 372 ntBASIC4.37□□□□□ -1.71
VSX1Q9NZR4 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
VSX1Q9NZR4 AL121834.1-202ENST00000404494 277 ntBASIC4.37□□□□□ -1.71
VSX1Q9NZR4 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC4.37□□□□□ -1.71
VSX1Q9NZR4 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC4.37□□□□□ -1.71
VSX1Q9NZR4 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC4.37□□□□□ -1.71
VSX1Q9NZR4 ZNF90P2-204ENST00000419323 1075 ntBASIC4.37□□□□□ -1.71
VSX1Q9NZR4 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
VSX1Q9NZR4 MTND4P28-201ENST00000426217 387 ntBASIC4.37□□□□□ -1.71
VSX1Q9NZR4 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC4.37□□□□□ -1.71
VSX1Q9NZR4 RPL31P35-201ENST00000431058 377 ntBASIC4.37□□□□□ -1.71
VSX1Q9NZR4 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC4.37□□□□□ -1.71
VSX1Q9NZR4 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC4.37□□□□□ -1.71
VSX1Q9NZR4 MTCYBP45-201ENST00000435243 565 ntBASIC4.37□□□□□ -1.71
VSX1Q9NZR4 MTND4LP16-201ENST00000440828 295 ntBASIC4.37□□□□□ -1.71
VSX1Q9NZR4 AC000111.2-201ENST00000448200 210 ntBASIC4.37□□□□□ -1.71
VSX1Q9NZR4 RPL7P52-201ENST00000449200 742 ntBASIC4.37□□□□□ -1.71
VSX1Q9NZR4 ELOCP23-201ENST00000452014 332 ntBASIC4.37□□□□□ -1.71
VSX1Q9NZR4 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC4.37□□□□□ -1.71
VSX1Q9NZR4 AL591473.1-201ENST00000464297 313 ntBASIC4.37□□□□□ -1.71
VSX1Q9NZR4 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC4.37□□□□□ -1.71
VSX1Q9NZR4 RNA5SP92-201ENST00000516437 110 ntBASIC4.37□□□□□ -1.71
VSX1Q9NZR4 SNORA20.3-201ENST00000516880 132 ntBASIC4.37□□□□□ -1.71
VSX1Q9NZR4 RNU6-445P-201ENST00000516949 107 ntBASIC4.37□□□□□ -1.71
VSX1Q9NZR4 AP003181.2-201ENST00000528941 181 ntBASIC4.37□□□□□ -1.71
VSX1Q9NZR4 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC4.37□□□□□ -1.71
VSX1Q9NZR4 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC4.37□□□□□ -1.71
VSX1Q9NZR4 ADI1P3-201ENST00000549509 470 ntBASIC4.37□□□□□ -1.71
VSX1Q9NZR4 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC4.37□□□□□ -1.71
VSX1Q9NZR4 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC4.37□□□□□ -1.71
VSX1Q9NZR4 AC107954.1-201ENST00000565906 727 ntBASIC4.37□□□□□ -1.71
VSX1Q9NZR4 RN7SL753P-201ENST00000581238 290 ntBASIC4.37□□□□□ -1.71
VSX1Q9NZR4 AC011477.5-201ENST00000586571 259 ntBASIC4.37□□□□□ -1.71
VSX1Q9NZR4 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC4.37□□□□□ -1.71
VSX1Q9NZR4 BNIP3P33-201ENST00000598912 569 ntBASIC4.37□□□□□ -1.71
VSX1Q9NZR4 AC068790.5-201ENST00000602741 355 ntBASIC4.37□□□□□ -1.71
VSX1Q9NZR4 IGKV2OR2-2-201ENST00000605025 300 ntBASIC4.37□□□□□ -1.71
VSX1Q9NZR4 AP001330.5-201ENST00000607176 411 ntBASIC4.37□□□□□ -1.71
VSX1Q9NZR4 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
VSX1Q9NZR4 CGA-206ENST00000630630 832 ntTSL 2 BASIC4.37□□□□□ -1.71
VSX1Q9NZR4 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.37□□□□□ -1.71
VSX1Q9NZR4 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.37□□□□□ -1.71
VSX1Q9NZR4 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
VSX1Q9NZR4 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC4.37□□□□□ -1.71
VSX1Q9NZR4 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.37□□□□□ -1.71
VSX1Q9NZR4 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
VSX1Q9NZR4 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC4.37□□□□□ -1.71
VSX1Q9NZR4 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC4.37□□□□□ -1.71
VSX1Q9NZR4 AC008758.3-201ENST00000507003 1829 ntBASIC4.37□□□□□ -1.71
VSX1Q9NZR4 AL672167.1-205ENST00000641112 3080 ntBASIC4.37□□□□□ -1.71
VSX1Q9NZR4 MFSD4BP1-201ENST00000513330 1552 ntBASIC4.36□□□□□ -1.71
VSX1Q9NZR4 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
VSX1Q9NZR4 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC4.36□□□□□ -1.71
VSX1Q9NZR4 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
VSX1Q9NZR4 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
VSX1Q9NZR4 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.36□□□□□ -1.71
VSX1Q9NZR4 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
VSX1Q9NZR4 NUP58P1-201ENST00000502546 1738 ntBASIC4.36□□□□□ -1.71
VSX1Q9NZR4 AC107068.1-201ENST00000563286 4218 ntBASIC4.36□□□□□ -1.71
VSX1Q9NZR4 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
VSX1Q9NZR4 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
VSX1Q9NZR4 RNU6-97P-201ENST00000363387 104 ntBASIC4.36□□□□□ -1.71
VSX1Q9NZR4 Y_RNA.295-201ENST00000364918 102 ntBASIC4.36□□□□□ -1.71
VSX1Q9NZR4 RNA5SP428-201ENST00000365129 132 ntBASIC4.36□□□□□ -1.71
VSX1Q9NZR4 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
VSX1Q9NZR4 U3.20-201ENST00000390909 217 ntBASIC4.36□□□□□ -1.71
VSX1Q9NZR4 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC4.36□□□□□ -1.71
VSX1Q9NZR4 AP000580.1-201ENST00000404439 358 ntBASIC4.36□□□□□ -1.71
VSX1Q9NZR4 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC4.36□□□□□ -1.71
VSX1Q9NZR4 U3.35-201ENST00000408405 208 ntBASIC4.36□□□□□ -1.71
VSX1Q9NZR4 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC4.36□□□□□ -1.71
VSX1Q9NZR4 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC4.36□□□□□ -1.71
VSX1Q9NZR4 AF186996.5-201ENST00000418098 904 ntBASIC4.36□□□□□ -1.71
VSX1Q9NZR4 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC4.36□□□□□ -1.71
VSX1Q9NZR4 SNRPEP10-201ENST00000420249 274 ntBASIC4.36□□□□□ -1.71
VSX1Q9NZR4 BX510359.3-201ENST00000422168 306 ntBASIC4.36□□□□□ -1.71
VSX1Q9NZR4 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC4.36□□□□□ -1.71
VSX1Q9NZR4 PSMA6P3-201ENST00000428242 164 ntBASIC4.36□□□□□ -1.71
VSX1Q9NZR4 EZH2P1-201ENST00000431167 291 ntBASIC4.36□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 108.5 ms