Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 SNORD113.2-201ENST00000364166 89 ntBASIC6.23□□□□□ -1.41
CCDC87Q9NVE4 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC6.23□□□□□ -1.41
CCDC87Q9NVE4 RNA5SP241-201ENST00000391326 114 ntBASIC6.23□□□□□ -1.41
CCDC87Q9NVE4 MIR1302-11-201ENST00000408051 138 ntBASIC6.23□□□□□ -1.41
CCDC87Q9NVE4 MIR1302-9-201ENST00000408365 138 ntBASIC6.23□□□□□ -1.41
CCDC87Q9NVE4 MIR1302-10-201ENST00000408734 138 ntBASIC6.23□□□□□ -1.41
CCDC87Q9NVE4 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC6.23□□□□□ -1.41
CCDC87Q9NVE4 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC6.23□□□□□ -1.41
CCDC87Q9NVE4 UQCRBP1-201ENST00000421129 336 ntBASIC6.23□□□□□ -1.41
CCDC87Q9NVE4 COX6CP15-201ENST00000426313 211 ntBASIC6.23□□□□□ -1.41
CCDC87Q9NVE4 AL732292.1-201ENST00000426692 226 ntBASIC6.23□□□□□ -1.41
CCDC87Q9NVE4 AC137499.1-201ENST00000427602 88 ntBASIC6.23□□□□□ -1.41
CCDC87Q9NVE4 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC6.23□□□□□ -1.41
CCDC87Q9NVE4 AL606489.2-201ENST00000433886 234 ntBASIC6.23□□□□□ -1.41
CCDC87Q9NVE4 GPR143P-201ENST00000434155 205 ntBASIC6.23□□□□□ -1.41
CCDC87Q9NVE4 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC6.23□□□□□ -1.41
CCDC87Q9NVE4 AL049734.2-201ENST00000441066 616 ntBASIC6.23□□□□□ -1.41
CCDC87Q9NVE4 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC6.23□□□□□ -1.41
CCDC87Q9NVE4 AC243772.1-201ENST00000451620 410 ntBASIC6.23□□□□□ -1.41
CCDC87Q9NVE4 AL691482.1-201ENST00000453255 87 ntBASIC6.23□□□□□ -1.41
CCDC87Q9NVE4 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
CCDC87Q9NVE4 AC093840.1-201ENST00000511599 336 ntBASIC6.23□□□□□ -1.41
CCDC87Q9NVE4 RNA5SP464-201ENST00000516251 108 ntBASIC6.23□□□□□ -1.41
CCDC87Q9NVE4 SCARNA15.1-201ENST00000516384 125 ntBASIC6.23□□□□□ -1.41
CCDC87Q9NVE4 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC6.23□□□□□ -1.41
CCDC87Q9NVE4 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC6.23□□□□□ -1.41
CCDC87Q9NVE4 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC6.23□□□□□ -1.41
CCDC87Q9NVE4 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC6.23□□□□□ -1.41
CCDC87Q9NVE4 AC037471.2-201ENST00000564941 598 ntBASIC6.23□□□□□ -1.41
CCDC87Q9NVE4 AL356432.3-201ENST00000568952 465 ntBASIC6.23□□□□□ -1.41
CCDC87Q9NVE4 MIR1302-2-201ENST00000607096 138 ntBASIC6.23□□□□□ -1.41
CCDC87Q9NVE4 AC010424.2-201ENST00000607594 443 ntBASIC6.23□□□□□ -1.41
CCDC87Q9NVE4 AL049794.2-201ENST00000616301 365 ntBASIC6.23□□□□□ -1.41
CCDC87Q9NVE4 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
CCDC87Q9NVE4 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
CCDC87Q9NVE4 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
CCDC87Q9NVE4 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC6.23□□□□□ -1.41
CCDC87Q9NVE4 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC6.23□□□□□ -1.41
CCDC87Q9NVE4 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC6.23□□□□□ -1.41
CCDC87Q9NVE4 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC6.23□□□□□ -1.41
CCDC87Q9NVE4 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC6.23□□□□□ -1.41
CCDC87Q9NVE4 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
CCDC87Q9NVE4 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC6.23□□□□□ -1.41
CCDC87Q9NVE4 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 SNORA63-201ENST00000363450 132 ntBASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 RNA5SP447-201ENST00000363749 119 ntBASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 SNORA57.1-201ENST00000391227 145 ntBASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 SNORA48.7-201ENST00000391302 135 ntBASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 RNA5SP345-201ENST00000410646 108 ntBASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 RPL12P34-201ENST00000424532 479 ntBASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 AC016691.1-201ENST00000441321 413 ntBASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 CBWD4P-201ENST00000445695 655 ntBASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 AC007677.1-201ENST00000445757 515 ntBASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 AC005297.2-201ENST00000450430 606 ntBASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 RPS17P2-201ENST00000461663 408 ntBASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 SNORA70.11-201ENST00000515987 138 ntBASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 SNORA70.13-201ENST00000516116 138 ntBASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 IGHVIII-2-1-201ENST00000518843 291 ntBASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 AC022690.1-201ENST00000526681 550 ntBASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 SETP2-201ENST00000553886 926 ntBASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 RN7SL290P-201ENST00000578661 300 ntBASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 AC022726.1-201ENST00000587475 207 ntBASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 MIR6716-201ENST00000613413 80 ntBASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 AL022401.1-201ENST00000619498 108 ntBASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 SRP54-214ENST00000630962 162 ntTSL 5 BASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 AC105074.1-201ENST00000623380 3095 ntBASIC6.22□□□□□ -1.41
CCDC87Q9NVE4 AC130650.2-201ENST00000618736 2403 ntBASIC6.21□□□□□ -1.41
CCDC87Q9NVE4 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC6.21□□□□□ -1.41
CCDC87Q9NVE4 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC87Q9NVE4 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC87Q9NVE4 RNA5SP515-201ENST00000364570 118 ntBASIC6.21□□□□□ -1.42
CCDC87Q9NVE4 SNORA51.2-201ENST00000364595 132 ntBASIC6.21□□□□□ -1.42
CCDC87Q9NVE4 RNU6-169P-201ENST00000365336 107 ntBASIC6.21□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 78.7 ms