Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 GABPAP-201ENST00000419271 1356 ntBASIC3.16□□□□□ -1.9
CDX2Q99626 RNA5SP68-201ENST00000363885 119 ntBASIC3.16□□□□□ -1.9
CDX2Q99626 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
CDX2Q99626 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
CDX2Q99626 STATH-202ENST00000381060 534 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
CDX2Q99626 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
CDX2Q99626 MTND4P24-201ENST00000424002 397 ntBASIC3.16□□□□□ -1.9
CDX2Q99626 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC3.16□□□□□ -1.9
CDX2Q99626 ZNF965P-201ENST00000432501 817 ntBASIC3.16□□□□□ -1.9
CDX2Q99626 RSL24D1P8-201ENST00000434442 492 ntBASIC3.16□□□□□ -1.9
CDX2Q99626 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC3.16□□□□□ -1.9
CDX2Q99626 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC3.16□□□□□ -1.9
CDX2Q99626 TPRKBP1-201ENST00000456243 481 ntBASIC3.16□□□□□ -1.9
CDX2Q99626 SNRPGP3-201ENST00000469405 227 ntBASIC3.16□□□□□ -1.9
CDX2Q99626 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC3.16□□□□□ -1.9
CDX2Q99626 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC3.16□□□□□ -1.9
CDX2Q99626 MTND4LP24-201ENST00000572277 291 ntBASIC3.16□□□□□ -1.9
CDX2Q99626 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC3.16□□□□□ -1.9
CDX2Q99626 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.16□□□□□ -1.9
CDX2Q99626 AP003117.1-201ENST00000602771 554 ntBASIC3.16□□□□□ -1.9
CDX2Q99626 AC090525.3-201ENST00000605601 189 ntBASIC3.16□□□□□ -1.9
CDX2Q99626 AC104307.1-201ENST00000616142 196 ntBASIC3.16□□□□□ -1.9
CDX2Q99626 AL162233.1-201ENST00000620014 944 ntBASIC3.16□□□□□ -1.9
CDX2Q99626 U6.98-201ENST00000637157 84 ntBASIC3.16□□□□□ -1.9
CDX2Q99626 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.16□□□□□ -1.9
CDX2Q99626 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
CDX2Q99626 AF127577.6-201ENST00000623352 2191 ntBASIC3.15□□□□□ -1.9
CDX2Q99626 HSPA8P4-201ENST00000511877 1920 ntBASIC3.15□□□□□ -1.9
CDX2Q99626 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.15□□□□□ -1.9
CDX2Q99626 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
CDX2Q99626 AP006437.1-201ENST00000641440 3685 ntBASIC3.15□□□□□ -1.91
CDX2Q99626 Y_RNA.164-201ENST00000363709 102 ntBASIC3.15□□□□□ -1.91
CDX2Q99626 RNU6-283P-201ENST00000364788 107 ntBASIC3.15□□□□□ -1.91
CDX2Q99626 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.15□□□□□ -1.91
CDX2Q99626 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC3.15□□□□□ -1.91
CDX2Q99626 RNU6-317P-201ENST00000384031 107 ntBASIC3.15□□□□□ -1.91
CDX2Q99626 RPS3AP26-201ENST00000398259 784 ntBASIC3.15□□□□□ -1.91
CDX2Q99626 MIR1289-2-201ENST00000408360 111 ntBASIC3.15□□□□□ -1.91
CDX2Q99626 PRELID3BP11-201ENST00000414230 479 ntBASIC3.15□□□□□ -1.91
CDX2Q99626 LINC01347-201ENST00000417964 355 ntBASIC3.15□□□□□ -1.91
CDX2Q99626 MORF4L1P7-201ENST00000426038 703 ntBASIC3.15□□□□□ -1.91
CDX2Q99626 AL365396.1-201ENST00000430854 671 ntBASIC3.15□□□□□ -1.91
CDX2Q99626 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC3.15□□□□□ -1.91
CDX2Q99626 AC010468.1-201ENST00000461022 817 ntBASIC3.15□□□□□ -1.91
CDX2Q99626 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.91
CDX2Q99626 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC3.15□□□□□ -1.91
CDX2Q99626 OR5AP1P-201ENST00000529730 940 ntBASIC3.15□□□□□ -1.91
CDX2Q99626 OR11H5P-201ENST00000554039 926 ntBASIC3.15□□□□□ -1.91
CDX2Q99626 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC3.15□□□□□ -1.91
CDX2Q99626 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC3.15□□□□□ -1.91
CDX2Q99626 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC3.15□□□□□ -1.91
CDX2Q99626 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC3.15□□□□□ -1.91
CDX2Q99626 AC106785.3-201ENST00000564064 847 ntBASIC3.15□□□□□ -1.91
CDX2Q99626 AC096947.1-201ENST00000603233 470 ntBASIC3.15□□□□□ -1.91
CDX2Q99626 MIR6817-201ENST00000615588 66 ntBASIC3.15□□□□□ -1.91
CDX2Q99626 AC015726.3-201ENST00000624501 418 ntBASIC3.15□□□□□ -1.91
CDX2Q99626 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC3.15□□□□□ -1.91
CDX2Q99626 AC099063.3-201ENST00000642066 185 ntBASIC3.15□□□□□ -1.91
CDX2Q99626 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC3.15□□□□□ -1.91
CDX2Q99626 GTF2H2B-203ENST00000508065 1432 ntBASIC3.15□□□□□ -1.91
CDX2Q99626 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
CDX2Q99626 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
CDX2Q99626 AC000367.1-201ENST00000452711 1766 ntBASIC3.15□□□□□ -1.91
CDX2Q99626 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
CDX2Q99626 HSPA8P1-201ENST00000425843 1833 ntBASIC3.14□□□□□ -1.91
CDX2Q99626 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.14□□□□□ -1.91
CDX2Q99626 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
CDX2Q99626 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
CDX2Q99626 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
CDX2Q99626 HMGB3P18-201ENST00000406327 590 ntBASIC3.14□□□□□ -1.91
CDX2Q99626 RNU2-37P-201ENST00000410695 177 ntBASIC3.14□□□□□ -1.91
CDX2Q99626 RNU2-6P-201ENST00000411404 190 ntBASIC3.14□□□□□ -1.91
CDX2Q99626 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC3.14□□□□□ -1.91
CDX2Q99626 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC3.14□□□□□ -1.91
CDX2Q99626 MTND2P21-201ENST00000436242 1042 ntBASIC3.14□□□□□ -1.91
CDX2Q99626 AP000936.2-201ENST00000447151 681 ntBASIC3.14□□□□□ -1.91
CDX2Q99626 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC3.14□□□□□ -1.91
CDX2Q99626 RPS3P1-201ENST00000456781 192 ntBASIC3.14□□□□□ -1.91
CDX2Q99626 RPS27AP9-201ENST00000477681 438 ntBASIC3.14□□□□□ -1.91
CDX2Q99626 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.14□□□□□ -1.91
CDX2Q99626 RNU2-58P-201ENST00000516403 183 ntBASIC3.14□□□□□ -1.91
CDX2Q99626 IGKV3-31-201ENST00000523109 329 ntBASIC3.14□□□□□ -1.91
CDX2Q99626 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.14□□□□□ -1.91
CDX2Q99626 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC3.14□□□□□ -1.91
CDX2Q99626 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.14□□□□□ -1.91
CDX2Q99626 ZNF92P3-201ENST00000596594 954 ntBASIC3.14□□□□□ -1.91
CDX2Q99626 AC024153.1-201ENST00000603103 365 ntBASIC3.14□□□□□ -1.91
CDX2Q99626 AL034351.1-201ENST00000605288 668 ntBASIC3.14□□□□□ -1.91
CDX2Q99626 AL355816.1-201ENST00000607951 118 ntBASIC3.14□□□□□ -1.91
CDX2Q99626 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.14□□□□□ -1.91
CDX2Q99626 AC092184.1-201ENST00000625042 715 ntBASIC3.14□□□□□ -1.91
CDX2Q99626 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.14□□□□□ -1.91
CDX2Q99626 AC080128.1-201ENST00000474389 1917 ntBASIC3.14□□□□□ -1.91
CDX2Q99626 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.14□□□□□ -1.91
CDX2Q99626 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC3.14□□□□□ -1.91
CDX2Q99626 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC3.14□□□□□ -1.91
CDX2Q99626 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
CDX2Q99626 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.13□□□□□ -1.91
CDX2Q99626 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.13□□□□□ -1.91
CDX2Q99626 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC3.13□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 77.1 ms