Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.55□□□□□ -1.84
VPS39Q96JC1 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
VPS39Q96JC1 IL7R-208ENST00000511982 612 ntTSL 2 BASIC3.55□□□□□ -1.84
VPS39Q96JC1 RN7SKP60-201ENST00000516985 239 ntBASIC3.55□□□□□ -1.84
VPS39Q96JC1 RNU6-711P-201ENST00000517255 106 ntBASIC3.55□□□□□ -1.84
VPS39Q96JC1 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC3.55□□□□□ -1.84
VPS39Q96JC1 RANP9-201ENST00000519957 271 ntBASIC3.55□□□□□ -1.84
VPS39Q96JC1 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
VPS39Q96JC1 SNRPGP16-201ENST00000533275 226 ntBASIC3.55□□□□□ -1.84
VPS39Q96JC1 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC3.55□□□□□ -1.84
VPS39Q96JC1 DUXAP6-201ENST00000553858 601 ntBASIC3.55□□□□□ -1.84
VPS39Q96JC1 AL389895.1-201ENST00000554127 252 ntBASIC3.55□□□□□ -1.84
VPS39Q96JC1 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC3.55□□□□□ -1.84
VPS39Q96JC1 TGIF1P1-201ENST00000558095 802 ntBASIC3.55□□□□□ -1.84
VPS39Q96JC1 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.55□□□□□ -1.84
VPS39Q96JC1 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC3.55□□□□□ -1.84
VPS39Q96JC1 AC016877.3-201ENST00000606778 504 ntBASIC3.55□□□□□ -1.84
VPS39Q96JC1 RMST_8.1-201ENST00000610287 165 ntBASIC3.55□□□□□ -1.84
VPS39Q96JC1 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC3.55□□□□□ -1.84
VPS39Q96JC1 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC3.55□□□□□ -1.84
VPS39Q96JC1 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.54□□□□□ -1.84
VPS39Q96JC1 NUP58P1-201ENST00000502546 1738 ntBASIC3.54□□□□□ -1.84
VPS39Q96JC1 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
VPS39Q96JC1 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC3.54□□□□□ -1.84
VPS39Q96JC1 RNA5SP479-201ENST00000364858 117 ntBASIC3.54□□□□□ -1.84
VPS39Q96JC1 RNU6-1074P-201ENST00000383995 104 ntBASIC3.54□□□□□ -1.84
VPS39Q96JC1 RNU6-468P-201ENST00000384003 109 ntBASIC3.54□□□□□ -1.84
VPS39Q96JC1 RNU1-101P-201ENST00000391171 127 ntBASIC3.54□□□□□ -1.84
VPS39Q96JC1 SLC9B1P2-201ENST00000398120 1184 ntBASIC3.54□□□□□ -1.84
VPS39Q96JC1 RPS3AP26-201ENST00000398259 784 ntBASIC3.54□□□□□ -1.84
VPS39Q96JC1 AL354719.1-201ENST00000406535 843 ntBASIC3.54□□□□□ -1.84
VPS39Q96JC1 RPL21P32-201ENST00000419877 477 ntBASIC3.54□□□□□ -1.84
VPS39Q96JC1 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC3.54□□□□□ -1.84
VPS39Q96JC1 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.54□□□□□ -1.84
VPS39Q96JC1 AC233728.2-201ENST00000425348 757 ntBASIC3.54□□□□□ -1.84
VPS39Q96JC1 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC3.54□□□□□ -1.84
VPS39Q96JC1 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC3.54□□□□□ -1.84
VPS39Q96JC1 AC044797.1-201ENST00000445744 679 ntBASIC3.54□□□□□ -1.84
VPS39Q96JC1 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC3.54□□□□□ -1.84
VPS39Q96JC1 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC3.54□□□□□ -1.84
VPS39Q96JC1 CCNB1IP1P3-201ENST00000454702 829 ntBASIC3.54□□□□□ -1.84
VPS39Q96JC1 AC004801.2-202ENST00000463559 283 ntBASIC3.54□□□□□ -1.84
VPS39Q96JC1 RPL23AP44-201ENST00000482216 473 ntBASIC3.54□□□□□ -1.84
VPS39Q96JC1 AC093801.2-201ENST00000503966 1050 ntBASIC3.54□□□□□ -1.84
VPS39Q96JC1 AC093767.1-201ENST00000504523 156 ntBASIC3.54□□□□□ -1.84
VPS39Q96JC1 MLLT10P2-201ENST00000506434 249 ntBASIC3.54□□□□□ -1.84
VPS39Q96JC1 MTND4LP22-201ENST00000508209 276 ntBASIC3.54□□□□□ -1.84
VPS39Q96JC1 SNORD59.2-201ENST00000516873 68 ntBASIC3.54□□□□□ -1.84
VPS39Q96JC1 RNA5SP135-201ENST00000517019 125 ntBASIC3.54□□□□□ -1.84
VPS39Q96JC1 TBCA-206ENST00000518338 551 ntTSL 2 BASIC3.54□□□□□ -1.84
VPS39Q96JC1 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC3.54□□□□□ -1.84
VPS39Q96JC1 AC018630.1-201ENST00000541376 925 ntBASIC3.54□□□□□ -1.84
VPS39Q96JC1 AC026333.2-201ENST00000542164 106 ntBASIC3.54□□□□□ -1.84
VPS39Q96JC1 AL391156.1-201ENST00000554965 554 ntBASIC3.54□□□□□ -1.84
VPS39Q96JC1 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC3.54□□□□□ -1.84
VPS39Q96JC1 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.54□□□□□ -1.84
VPS39Q96JC1 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC3.54□□□□□ -1.84
VPS39Q96JC1 COX6CP3-201ENST00000580869 223 ntBASIC3.54□□□□□ -1.84
VPS39Q96JC1 AC107982.3-201ENST00000584957 985 ntBASIC3.54□□□□□ -1.84
VPS39Q96JC1 BDH2P1-201ENST00000602288 736 ntBASIC3.54□□□□□ -1.84
VPS39Q96JC1 AC068620.3-201ENST00000602749 560 ntBASIC3.54□□□□□ -1.84
VPS39Q96JC1 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.54□□□□□ -1.84
VPS39Q96JC1 AP001330.4-201ENST00000604350 154 ntBASIC3.54□□□□□ -1.84
VPS39Q96JC1 BNIP3P31-201ENST00000604515 566 ntBASIC3.54□□□□□ -1.84
VPS39Q96JC1 AC002487.1-201ENST00000604565 994 ntBASIC3.54□□□□□ -1.84
VPS39Q96JC1 AC055876.5-201ENST00000605667 259 ntBASIC3.54□□□□□ -1.84
VPS39Q96JC1 AL391497.1-201ENST00000608671 547 ntBASIC3.54□□□□□ -1.84
VPS39Q96JC1 AC099778.2-201ENST00000610904 211 ntBASIC3.54□□□□□ -1.84
VPS39Q96JC1 AL592295.2-201ENST00000612578 206 ntBASIC3.54□□□□□ -1.84
VPS39Q96JC1 AL357559.1-201ENST00000622228 274 ntBASIC3.54□□□□□ -1.84
VPS39Q96JC1 AL121594.5-201ENST00000631724 573 ntBASIC3.54□□□□□ -1.84
VPS39Q96JC1 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
VPS39Q96JC1 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.54□□□□□ -1.84
VPS39Q96JC1 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.54□□□□□ -1.84
VPS39Q96JC1 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
VPS39Q96JC1 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
VPS39Q96JC1 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
VPS39Q96JC1 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC3.53□□□□□ -1.84
VPS39Q96JC1 RNU6-549P-201ENST00000384433 107 ntBASIC3.53□□□□□ -1.84
VPS39Q96JC1 SNORD116-23-201ENST00000384645 92 ntBASIC3.53□□□□□ -1.84
VPS39Q96JC1 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
VPS39Q96JC1 AC007066.1-201ENST00000392902 381 ntBASIC3.53□□□□□ -1.84
VPS39Q96JC1 AL603865.2-201ENST00000401679 213 ntBASIC3.53□□□□□ -1.84
VPS39Q96JC1 RNU6-1077P-201ENST00000410506 102 ntBASIC3.53□□□□□ -1.84
VPS39Q96JC1 RN7SKP53-201ENST00000411337 315 ntBASIC3.53□□□□□ -1.84
VPS39Q96JC1 AC092638.1-201ENST00000411966 1275 ntBASIC3.53□□□□□ -1.84
VPS39Q96JC1 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC3.53□□□□□ -1.84
VPS39Q96JC1 RPL17P36-201ENST00000420302 549 ntBASIC3.53□□□□□ -1.84
VPS39Q96JC1 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC3.53□□□□□ -1.84
VPS39Q96JC1 UBE2D3P2-201ENST00000424409 445 ntBASIC3.53□□□□□ -1.84
VPS39Q96JC1 RPL31P54-201ENST00000429803 370 ntBASIC3.53□□□□□ -1.84
VPS39Q96JC1 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC3.53□□□□□ -1.84
VPS39Q96JC1 AC005345.1-201ENST00000431868 217 ntBASIC3.53□□□□□ -1.84
VPS39Q96JC1 MTCYBP34-201ENST00000439552 670 ntBASIC3.53□□□□□ -1.84
VPS39Q96JC1 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC3.53□□□□□ -1.84
VPS39Q96JC1 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC3.53□□□□□ -1.84
VPS39Q96JC1 AL357552.1-201ENST00000445254 415 ntBASIC3.53□□□□□ -1.84
VPS39Q96JC1 RPL36AP33-201ENST00000450395 310 ntBASIC3.53□□□□□ -1.84
VPS39Q96JC1 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC3.53□□□□□ -1.84
VPS39Q96JC1 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 109.6 ms