Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 TRBV12-2-201ENST00000489763 344 ntBASIC3.69□□□□□ -1.82
HDDC3Q8N4P3 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.69□□□□□ -1.82
HDDC3Q8N4P3 NAMPTP2-201ENST00000505629 1115 ntBASIC3.69□□□□□ -1.82
HDDC3Q8N4P3 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC3.69□□□□□ -1.82
HDDC3Q8N4P3 RNA5SP468-201ENST00000516782 93 ntBASIC3.69□□□□□ -1.82
HDDC3Q8N4P3 snoZ278.1-201ENST00000517059 112 ntBASIC3.69□□□□□ -1.82
HDDC3Q8N4P3 AC023632.1-201ENST00000518463 375 ntBASIC3.69□□□□□ -1.82
HDDC3Q8N4P3 AC087894.1-201ENST00000538359 518 ntBASIC3.69□□□□□ -1.82
HDDC3Q8N4P3 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC3.69□□□□□ -1.82
HDDC3Q8N4P3 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.69□□□□□ -1.82
HDDC3Q8N4P3 AC044913.1-201ENST00000557200 430 ntBASIC3.69□□□□□ -1.82
HDDC3Q8N4P3 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
HDDC3Q8N4P3 AP005137.2-201ENST00000609238 400 ntBASIC3.69□□□□□ -1.82
HDDC3Q8N4P3 MIR7851-201ENST00000610611 160 ntBASIC3.69□□□□□ -1.82
HDDC3Q8N4P3 VN1R7P-201ENST00000619242 903 ntBASIC3.69□□□□□ -1.82
HDDC3Q8N4P3 AP000943.4-201ENST00000622912 357 ntBASIC3.69□□□□□ -1.82
HDDC3Q8N4P3 AC006927.2-201ENST00000639256 389 ntBASIC3.69□□□□□ -1.82
HDDC3Q8N4P3 AP000553.6-201ENST00000641242 118 ntBASIC3.69□□□□□ -1.82
HDDC3Q8N4P3 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
HDDC3Q8N4P3 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC3.69□□□□□ -1.82
HDDC3Q8N4P3 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
HDDC3Q8N4P3 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
HDDC3Q8N4P3 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
HDDC3Q8N4P3 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC3.69□□□□□ -1.82
HDDC3Q8N4P3 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
HDDC3Q8N4P3 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.68□□□□□ -1.82
HDDC3Q8N4P3 AC007823.1-201ENST00000569932 1566 ntBASIC3.68□□□□□ -1.82
HDDC3Q8N4P3 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
HDDC3Q8N4P3 AC138915.3-201ENST00000562908 1389 ntBASIC3.68□□□□□ -1.82
HDDC3Q8N4P3 AC244517.1-201ENST00000606030 2086 ntBASIC3.68□□□□□ -1.82
HDDC3Q8N4P3 HMGB1P5-201ENST00000255320 642 ntBASIC3.68□□□□□ -1.82
HDDC3Q8N4P3 SNORD9-201ENST00000362566 104 ntBASIC3.68□□□□□ -1.82
HDDC3Q8N4P3 U3.19-201ENST00000390893 196 ntBASIC3.68□□□□□ -1.82
HDDC3Q8N4P3 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.68□□□□□ -1.82
HDDC3Q8N4P3 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC3.68□□□□□ -1.82
HDDC3Q8N4P3 USP12PY-201ENST00000427677 1064 ntBASIC3.68□□□□□ -1.82
HDDC3Q8N4P3 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC3.68□□□□□ -1.82
HDDC3Q8N4P3 SETP5-201ENST00000437270 562 ntBASIC3.68□□□□□ -1.82
HDDC3Q8N4P3 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC3.68□□□□□ -1.82
HDDC3Q8N4P3 AC092393.1-201ENST00000439625 742 ntBASIC3.68□□□□□ -1.82
HDDC3Q8N4P3 SLC31A1P1-201ENST00000451221 567 ntBASIC3.68□□□□□ -1.82
HDDC3Q8N4P3 RPL6P9-201ENST00000466502 859 ntBASIC3.68□□□□□ -1.82
HDDC3Q8N4P3 RPL7P47-201ENST00000497299 556 ntBASIC3.68□□□□□ -1.82
HDDC3Q8N4P3 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC3.68□□□□□ -1.82
HDDC3Q8N4P3 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.68□□□□□ -1.82
HDDC3Q8N4P3 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
HDDC3Q8N4P3 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
HDDC3Q8N4P3 AC119751.5-201ENST00000514077 770 ntBASIC3.68□□□□□ -1.82
HDDC3Q8N4P3 RN7SKP13-201ENST00000515933 244 ntBASIC3.68□□□□□ -1.82
HDDC3Q8N4P3 HIGD1AP10-201ENST00000527837 282 ntBASIC3.68□□□□□ -1.82
HDDC3Q8N4P3 AP001317.1-201ENST00000531194 960 ntBASIC3.68□□□□□ -1.82
HDDC3Q8N4P3 AC008127.2-201ENST00000549925 1075 ntBASIC3.68□□□□□ -1.82
HDDC3Q8N4P3 AC126177.3-201ENST00000551839 688 ntBASIC3.68□□□□□ -1.82
HDDC3Q8N4P3 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC3.68□□□□□ -1.82
HDDC3Q8N4P3 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC3.68□□□□□ -1.82
HDDC3Q8N4P3 SULT1C2P1-202ENST00000562418 459 ntBASIC3.68□□□□□ -1.82
HDDC3Q8N4P3 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
HDDC3Q8N4P3 AC020914.6-201ENST00000594327 272 ntBASIC3.68□□□□□ -1.82
HDDC3Q8N4P3 AC124312.4-201ENST00000605533 310 ntBASIC3.68□□□□□ -1.82
HDDC3Q8N4P3 AL355365.1-201ENST00000616480 294 ntBASIC3.68□□□□□ -1.82
HDDC3Q8N4P3 ZNF663P-202ENST00000641770 1131 ntBASIC3.68□□□□□ -1.82
HDDC3Q8N4P3 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC3.68□□□□□ -1.82
HDDC3Q8N4P3 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.68□□□□□ -1.82
HDDC3Q8N4P3 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
HDDC3Q8N4P3 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.68□□□□□ -1.82
HDDC3Q8N4P3 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.68□□□□□ -1.82
HDDC3Q8N4P3 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
HDDC3Q8N4P3 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.68□□□□□ -1.82
HDDC3Q8N4P3 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
HDDC3Q8N4P3 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
HDDC3Q8N4P3 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
HDDC3Q8N4P3 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.67□□□□□ -1.82
HDDC3Q8N4P3 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
HDDC3Q8N4P3 CD36-221ENST00000534394 1741 ntTSL 2 BASIC3.67□□□□□ -1.82
HDDC3Q8N4P3 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.67□□□□□ -1.82
HDDC3Q8N4P3 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.67□□□□□ -1.82
HDDC3Q8N4P3 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
HDDC3Q8N4P3 GNG5P1-201ENST00000255500 204 ntBASIC3.67□□□□□ -1.82
HDDC3Q8N4P3 RNU6-251P-201ENST00000363235 104 ntBASIC3.67□□□□□ -1.82
HDDC3Q8N4P3 SNORA48.2-201ENST00000390926 124 ntBASIC3.67□□□□□ -1.82
HDDC3Q8N4P3 MCTS2P-201ENST00000394552 546 ntBASIC3.67□□□□□ -1.82
HDDC3Q8N4P3 RPL7P27-201ENST00000403775 720 ntBASIC3.67□□□□□ -1.82
HDDC3Q8N4P3 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.67□□□□□ -1.82
HDDC3Q8N4P3 RNU6-712P-201ENST00000410558 100 ntBASIC3.67□□□□□ -1.82
HDDC3Q8N4P3 NAP1L1P2-201ENST00000414182 1089 ntBASIC3.67□□□□□ -1.82
HDDC3Q8N4P3 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
HDDC3Q8N4P3 SDCBPP2-201ENST00000424643 885 ntBASIC3.67□□□□□ -1.82
HDDC3Q8N4P3 RPL31P54-201ENST00000429803 370 ntBASIC3.67□□□□□ -1.82
HDDC3Q8N4P3 UBE2V1P6-201ENST00000430840 422 ntBASIC3.67□□□□□ -1.82
HDDC3Q8N4P3 USP9YP31-201ENST00000431405 881 ntBASIC3.67□□□□□ -1.82
HDDC3Q8N4P3 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC3.67□□□□□ -1.82
HDDC3Q8N4P3 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.67□□□□□ -1.82
HDDC3Q8N4P3 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.67□□□□□ -1.82
HDDC3Q8N4P3 AF228730.2-201ENST00000438784 848 ntBASIC3.67□□□□□ -1.82
HDDC3Q8N4P3 MTCO1P48-201ENST00000448024 1096 ntBASIC3.67□□□□□ -1.82
HDDC3Q8N4P3 AC010655.1-201ENST00000449336 292 ntBASIC3.67□□□□□ -1.82
HDDC3Q8N4P3 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC3.67□□□□□ -1.82
HDDC3Q8N4P3 DYNLL1P6-201ENST00000503440 264 ntBASIC3.67□□□□□ -1.82
HDDC3Q8N4P3 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC3.67□□□□□ -1.82
HDDC3Q8N4P3 AC026784.1-201ENST00000507986 352 ntBASIC3.67□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 97.4 ms