Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 USP8P1-201ENST00000494673 3183 ntBASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC3.58□□□□□ -1.84
PDLIM3Q53GG5 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 AC021146.4-201ENST00000309229 279 ntBASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 SNORA51.2-201ENST00000364595 132 ntBASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 RNU6-621P-201ENST00000364752 109 ntBASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 SNORD82-201ENST00000365530 70 ntBASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 RPL23AP26-201ENST00000412728 464 ntBASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 RPL31P2-201ENST00000413849 377 ntBASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 MTND2P22-201ENST00000444325 1033 ntBASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 OR6C5P-201ENST00000452388 923 ntBASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 SNRPGP3-201ENST00000469405 227 ntBASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 AC146944.2-203ENST00000502493 354 ntBASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 RNF138P1-201ENST00000502765 546 ntBASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 AC093767.1-201ENST00000504523 156 ntBASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 AC139495.1-202ENST00000513164 354 ntBASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 IGKV2D-23-201ENST00000518179 286 ntBASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 OR4A45P-201ENST00000529954 901 ntBASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 AL139174.1-201ENST00000531489 886 ntBASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 VBP1-203ENST00000535916 944 ntTSL 2 BASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 AC107016.1-201ENST00000550463 337 ntBASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 MIR3200-201ENST00000580767 85 ntBASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 AC005412.1-201ENST00000580812 1049 ntBASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 AC115286.1-201ENST00000604298 434 ntBASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 IGHV3-29-201ENST00000604817 344 ntBASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 AC069304.2-201ENST00000605154 435 ntBASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 AC124312.4-201ENST00000605533 310 ntBASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 MIR432-201ENST00000606207 94 ntBASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 AL159169.3-201ENST00000608871 561 ntBASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 VIS1.1-201ENST00000610517 203 ntBASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 AC012409.3-201ENST00000611343 981 ntBASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 AF127577.6-201ENST00000623352 2191 ntBASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 AP001486.2-201ENST00000561652 5113 ntBASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC3.57□□□□□ -1.84
PDLIM3Q53GG5 AC130650.2-201ENST00000618736 2403 ntBASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 AC087359.1-201ENST00000508335 1740 ntBASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 RNA5SP283-201ENST00000365604 119 ntBASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 HSFY4P-201ENST00000415994 1181 ntBASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 AC018644.1-201ENST00000429934 551 ntBASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 AC011998.1-201ENST00000433403 117 ntBASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 YWHAZP7-201ENST00000436906 631 ntBASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 AC114495.1-201ENST00000441274 436 ntBASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 MTATP6P26-201ENST00000445926 662 ntBASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 RPL23AP43-201ENST00000446445 471 ntBASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 ARPC3P2-201ENST00000457786 533 ntBASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 RN7SL810P-201ENST00000493031 276 ntBASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 AC108078.3-201ENST00000502633 489 ntBASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 AC108941.1-201ENST00000502853 530 ntBASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 TMEM251P1-201ENST00000503717 318 ntBASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 ATP1B1P1-201ENST00000509767 915 ntBASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 CDV3-208ENST00000511392 554 ntTSL 5 BASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC3.56□□□□□ -1.84
PDLIM3Q53GG5 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC3.56□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 11.3 ms