Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 RPS6P12-201ENST00000432491 726 ntBASIC4.14□□□□□ -1.75
USP41Q3LFD5 YWHAZP7-201ENST00000436906 631 ntBASIC4.14□□□□□ -1.75
USP41Q3LFD5 AC092427.1-201ENST00000439177 601 ntBASIC4.14□□□□□ -1.75
USP41Q3LFD5 MTND5P2-201ENST00000442927 1142 ntBASIC4.14□□□□□ -1.75
USP41Q3LFD5 RANP8-201ENST00000444720 713 ntBASIC4.14□□□□□ -1.75
USP41Q3LFD5 MTATP6P26-201ENST00000445926 662 ntBASIC4.14□□□□□ -1.75
USP41Q3LFD5 VN1R10P-201ENST00000447106 875 ntBASIC4.14□□□□□ -1.75
USP41Q3LFD5 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC4.14□□□□□ -1.75
USP41Q3LFD5 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC4.14□□□□□ -1.75
USP41Q3LFD5 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC4.14□□□□□ -1.75
USP41Q3LFD5 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC4.14□□□□□ -1.75
USP41Q3LFD5 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC4.14□□□□□ -1.75
USP41Q3LFD5 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC4.14□□□□□ -1.75
USP41Q3LFD5 MTCYBP17-201ENST00000503579 789 ntBASIC4.14□□□□□ -1.75
USP41Q3LFD5 AC093281.2-201ENST00000510153 597 ntBASIC4.14□□□□□ -1.75
USP41Q3LFD5 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC4.14□□□□□ -1.75
USP41Q3LFD5 AC104057.1-201ENST00000515547 497 ntBASIC4.14□□□□□ -1.75
USP41Q3LFD5 RN7SKP277-201ENST00000516895 283 ntBASIC4.14□□□□□ -1.75
USP41Q3LFD5 SCARNA14-201ENST00000516903 136 ntBASIC4.14□□□□□ -1.75
USP41Q3LFD5 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC4.14□□□□□ -1.75
USP41Q3LFD5 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC4.14□□□□□ -1.75
USP41Q3LFD5 ZNF705CP-201ENST00000530515 889 ntBASIC4.14□□□□□ -1.75
USP41Q3LFD5 AC007834.2-201ENST00000536310 343 ntBASIC4.14□□□□□ -1.75
USP41Q3LFD5 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC4.14□□□□□ -1.75
USP41Q3LFD5 AC125611.1-201ENST00000549563 229 ntBASIC4.14□□□□□ -1.75
USP41Q3LFD5 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.14□□□□□ -1.75
USP41Q3LFD5 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC4.14□□□□□ -1.75
USP41Q3LFD5 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC4.14□□□□□ -1.75
USP41Q3LFD5 YWHAQP7-201ENST00000603536 658 ntBASIC4.14□□□□□ -1.75
USP41Q3LFD5 AC115621.1-201ENST00000604653 858 ntBASIC4.14□□□□□ -1.75
USP41Q3LFD5 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC4.14□□□□□ -1.75
USP41Q3LFD5 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC4.14□□□□□ -1.75
USP41Q3LFD5 AC245297.2-201ENST00000610119 565 ntBASIC4.14□□□□□ -1.75
USP41Q3LFD5 AC092650.2-201ENST00000619984 902 ntBASIC4.14□□□□□ -1.75
USP41Q3LFD5 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC4.14□□□□□ -1.75
USP41Q3LFD5 AL034408.1-202ENST00000636088 415 ntBASIC4.14□□□□□ -1.75
USP41Q3LFD5 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.14□□□□□ -1.75
USP41Q3LFD5 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC4.14□□□□□ -1.75
USP41Q3LFD5 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
USP41Q3LFD5 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC4.14□□□□□ -1.75
USP41Q3LFD5 OR5BR1P-201ENST00000524992 1330 ntBASIC4.14□□□□□ -1.75
USP41Q3LFD5 ZNF37BP-203ENST00000452306 1352 ntBASIC4.14□□□□□ -1.75
USP41Q3LFD5 AP000526.1-201ENST00000603308 1388 ntBASIC4.14□□□□□ -1.75
USP41Q3LFD5 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
USP41Q3LFD5 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
USP41Q3LFD5 ST7-221ENST00000465133 2155 ntTSL 5 BASIC4.13□□□□□ -1.75
USP41Q3LFD5 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC4.13□□□□□ -1.75
USP41Q3LFD5 SNORA70.4-201ENST00000365509 134 ntBASIC4.13□□□□□ -1.75
USP41Q3LFD5 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC4.13□□□□□ -1.75
USP41Q3LFD5 AL590084.2-201ENST00000401481 382 ntBASIC4.13□□□□□ -1.75
USP41Q3LFD5 AL138878.1-201ENST00000405131 347 ntBASIC4.13□□□□□ -1.75
USP41Q3LFD5 AL133384.1-201ENST00000412744 351 ntBASIC4.13□□□□□ -1.75
USP41Q3LFD5 CRYBB2P1-203ENST00000415709 538 ntBASIC4.13□□□□□ -1.75
USP41Q3LFD5 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC4.13□□□□□ -1.75
USP41Q3LFD5 TRBV24OR9-2-201ENST00000416632 435 ntBASIC4.13□□□□□ -1.75
USP41Q3LFD5 MTND2P18-201ENST00000419962 1030 ntBASIC4.13□□□□□ -1.75
USP41Q3LFD5 AC234781.2-201ENST00000426370 994 ntBASIC4.13□□□□□ -1.75
USP41Q3LFD5 HMGB1P37-201ENST00000439613 609 ntBASIC4.13□□□□□ -1.75
USP41Q3LFD5 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC4.13□□□□□ -1.75
USP41Q3LFD5 AL133217.1-201ENST00000450980 425 ntBASIC4.13□□□□□ -1.75
USP41Q3LFD5 BX276092.4-201ENST00000452056 248 ntBASIC4.13□□□□□ -1.75
USP41Q3LFD5 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC4.13□□□□□ -1.75
USP41Q3LFD5 AL133162.1-201ENST00000463228 453 ntBASIC4.13□□□□□ -1.75
USP41Q3LFD5 LINC00888-204ENST00000487386 421 ntBASIC4.13□□□□□ -1.75
USP41Q3LFD5 HMGN1P11-201ENST00000508668 303 ntBASIC4.13□□□□□ -1.75
USP41Q3LFD5 RNA5SP164-201ENST00000516533 110 ntBASIC4.13□□□□□ -1.75
USP41Q3LFD5 IGKV2-38-201ENST00000517443 247 ntBASIC4.13□□□□□ -1.75
USP41Q3LFD5 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
USP41Q3LFD5 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
USP41Q3LFD5 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
USP41Q3LFD5 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC4.13□□□□□ -1.75
USP41Q3LFD5 AC008127.2-201ENST00000549925 1075 ntBASIC4.13□□□□□ -1.75
USP41Q3LFD5 AL389895.1-201ENST00000554127 252 ntBASIC4.13□□□□□ -1.75
USP41Q3LFD5 AC008015.1-201ENST00000555505 465 ntBASIC4.13□□□□□ -1.75
USP41Q3LFD5 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC4.13□□□□□ -1.75
USP41Q3LFD5 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC4.13□□□□□ -1.75
USP41Q3LFD5 AL049634.3-201ENST00000604968 457 ntBASIC4.13□□□□□ -1.75
USP41Q3LFD5 AC069304.2-201ENST00000605154 435 ntBASIC4.13□□□□□ -1.75
USP41Q3LFD5 AC018638.7-201ENST00000605836 1114 ntBASIC4.13□□□□□ -1.75
USP41Q3LFD5 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC4.13□□□□□ -1.75
USP41Q3LFD5 AL360219.1-201ENST00000610230 366 ntBASIC4.13□□□□□ -1.75
USP41Q3LFD5 AC004908.3-201ENST00000610248 625 ntBASIC4.13□□□□□ -1.75
USP41Q3LFD5 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC4.13□□□□□ -1.75
USP41Q3LFD5 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC4.13□□□□□ -1.75
USP41Q3LFD5 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
USP41Q3LFD5 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
USP41Q3LFD5 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
USP41Q3LFD5 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
USP41Q3LFD5 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC4.13□□□□□ -1.75
USP41Q3LFD5 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
USP41Q3LFD5 OR11H5P-202ENST00000641612 1325 ntBASIC4.13□□□□□ -1.75
USP41Q3LFD5 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
USP41Q3LFD5 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
USP41Q3LFD5 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC4.13□□□□□ -1.75
USP41Q3LFD5 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
USP41Q3LFD5 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC4.13□□□□□ -1.75
USP41Q3LFD5 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
USP41Q3LFD5 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
USP41Q3LFD5 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
USP41Q3LFD5 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC4.12□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 85.7 ms