Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 RNU6-441P-201ENST00000384545 106 ntBASIC5.56□□□□□ -1.52
SOX4Q06945 Y_RNA.530-201ENST00000384587 101 ntBASIC5.56□□□□□ -1.52
SOX4Q06945 RNU11-201ENST00000387069 134 ntBASIC5.56□□□□□ -1.52
SOX4Q06945 MIR548K-201ENST00000408406 116 ntBASIC5.56□□□□□ -1.52
SOX4Q06945 RNU6-370P-201ENST00000411008 104 ntBASIC5.56□□□□□ -1.52
SOX4Q06945 GJA6P-201ENST00000415117 1042 ntBASIC5.56□□□□□ -1.52
SOX4Q06945 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC5.56□□□□□ -1.52
SOX4Q06945 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC5.56□□□□□ -1.52
SOX4Q06945 BX276092.6-201ENST00000430476 250 ntBASIC5.56□□□□□ -1.52
SOX4Q06945 RPS27P18-201ENST00000431701 247 ntBASIC5.56□□□□□ -1.52
SOX4Q06945 YWHAZP8-201ENST00000436935 731 ntBASIC5.56□□□□□ -1.52
SOX4Q06945 Z98949.2-201ENST00000440996 144 ntBASIC5.56□□□□□ -1.52
SOX4Q06945 BTF3P15-201ENST00000455606 336 ntBASIC5.56□□□□□ -1.52
SOX4Q06945 BX276092.8-201ENST00000455722 250 ntBASIC5.56□□□□□ -1.52
SOX4Q06945 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC5.56□□□□□ -1.52
SOX4Q06945 RN7SL189P-201ENST00000468631 289 ntBASIC5.56□□□□□ -1.52
SOX4Q06945 AP000893.1-201ENST00000474462 794 ntBASIC5.56□□□□□ -1.52
SOX4Q06945 AC055855.1-201ENST00000489563 579 ntBASIC5.56□□□□□ -1.52
SOX4Q06945 CCDC34P1-201ENST00000507441 517 ntBASIC5.56□□□□□ -1.52
SOX4Q06945 AP001804.3-201ENST00000525146 880 ntBASIC5.56□□□□□ -1.52
SOX4Q06945 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC5.56□□□□□ -1.52
SOX4Q06945 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC5.56□□□□□ -1.52
SOX4Q06945 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC5.56□□□□□ -1.52
SOX4Q06945 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC5.56□□□□□ -1.52
SOX4Q06945 AL360012.1-201ENST00000602813 131 ntBASIC5.56□□□□□ -1.52
SOX4Q06945 AL022099.1-201ENST00000604551 712 ntBASIC5.56□□□□□ -1.52
SOX4Q06945 Mico1.1-201ENST00000611698 204 ntBASIC5.56□□□□□ -1.52
SOX4Q06945 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC5.56□□□□□ -1.52
SOX4Q06945 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC5.56□□□□□ -1.52
SOX4Q06945 ATM-230ENST00000640388 578 ntTSL 5 BASIC5.56□□□□□ -1.52
SOX4Q06945 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SOX4Q06945 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
SOX4Q06945 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC5.56□□□□□ -1.52
SOX4Q06945 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC5.56□□□□□ -1.52
SOX4Q06945 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC5.56□□□□□ -1.52
SOX4Q06945 ACTR3BP5-201ENST00000448440 1479 ntBASIC5.56□□□□□ -1.52
SOX4Q06945 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC5.56□□□□□ -1.52
SOX4Q06945 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SOX4Q06945 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC5.56□□□□□ -1.52
SOX4Q06945 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC5.56□□□□□ -1.52
SOX4Q06945 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
SOX4Q06945 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
SOX4Q06945 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC5.55□□□□□ -1.52
SOX4Q06945 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
SOX4Q06945 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
SOX4Q06945 RNU6-28P-201ENST00000362378 107 ntBASIC5.55□□□□□ -1.52
SOX4Q06945 Y_RNA.112-201ENST00000363250 102 ntBASIC5.55□□□□□ -1.52
SOX4Q06945 MT-TG-201ENST00000387429 68 ntBASIC5.55□□□□□ -1.52
SOX4Q06945 MIR454-201ENST00000390180 115 ntBASIC5.55□□□□□ -1.52
SOX4Q06945 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
SOX4Q06945 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
SOX4Q06945 AL023807.1-201ENST00000407932 359 ntBASIC5.55□□□□□ -1.52
SOX4Q06945 RN7SKP114-201ENST00000410327 279 ntBASIC5.55□□□□□ -1.52
SOX4Q06945 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC5.55□□□□□ -1.52
SOX4Q06945 AC074085.1-201ENST00000413598 418 ntBASIC5.55□□□□□ -1.52
SOX4Q06945 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC5.55□□□□□ -1.52
SOX4Q06945 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC5.55□□□□□ -1.52
SOX4Q06945 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC5.55□□□□□ -1.52
SOX4Q06945 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC5.55□□□□□ -1.52
SOX4Q06945 MRPS31P2-201ENST00000451581 518 ntBASIC5.55□□□□□ -1.52
SOX4Q06945 RPL7L1P8-201ENST00000469911 741 ntBASIC5.55□□□□□ -1.52
SOX4Q06945 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC5.55□□□□□ -1.52
SOX4Q06945 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC5.55□□□□□ -1.52
SOX4Q06945 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC5.55□□□□□ -1.52
SOX4Q06945 RN7SKP96-201ENST00000516948 297 ntBASIC5.55□□□□□ -1.52
SOX4Q06945 AC022360.1-201ENST00000521058 340 ntBASIC5.55□□□□□ -1.52
SOX4Q06945 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC5.55□□□□□ -1.52
SOX4Q06945 AC103843.2-201ENST00000530523 682 ntBASIC5.55□□□□□ -1.52
SOX4Q06945 OR5D15P-201ENST00000531671 942 ntBASIC5.55□□□□□ -1.52
SOX4Q06945 LSM6P2-201ENST00000552208 177 ntBASIC5.55□□□□□ -1.52
SOX4Q06945 CLMN-206ENST00000556441 452 ntTSL 5 BASIC5.55□□□□□ -1.52
SOX4Q06945 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC5.55□□□□□ -1.52
SOX4Q06945 AC008269.2-201ENST00000561915 1105 ntBASIC5.55□□□□□ -1.52
SOX4Q06945 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC5.55□□□□□ -1.52
SOX4Q06945 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC5.55□□□□□ -1.52
SOX4Q06945 MIR3942-201ENST00000585264 109 ntBASIC5.55□□□□□ -1.52
SOX4Q06945 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC5.55□□□□□ -1.52
SOX4Q06945 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC5.55□□□□□ -1.52
SOX4Q06945 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC5.55□□□□□ -1.52
SOX4Q06945 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC5.55□□□□□ -1.52
SOX4Q06945 AC005014.2-201ENST00000607795 599 ntBASIC5.55□□□□□ -1.52
SOX4Q06945 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
SOX4Q06945 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC5.55□□□□□ -1.52
SOX4Q06945 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC5.55□□□□□ -1.52
SOX4Q06945 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
SOX4Q06945 AC134882.1-201ENST00000603738 1676 ntBASIC5.55□□□□□ -1.52
SOX4Q06945 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
SOX4Q06945 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
SOX4Q06945 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC5.55□□□□□ -1.52
SOX4Q06945 APBB2-230ENST00000543538 6992 ntTSL 5 BASIC5.55□□□□□ -1.52
SOX4Q06945 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
SOX4Q06945 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC5.55□□□□□ -1.52
SOX4Q06945 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC5.55□□□□□ -1.52
SOX4Q06945 AP005435.3-201ENST00000531260 3198 ntBASIC5.55□□□□□ -1.52
SOX4Q06945 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
SOX4Q06945 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
SOX4Q06945 ALB-214ENST00000509063 1911 ntTSL 5 BASIC5.54□□□□□ -1.52
SOX4Q06945 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
SOX4Q06945 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
SOX4Q06945 RNU5E-8P-201ENST00000363502 116 ntBASIC5.54□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 79.8 ms