Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC1.77□□□□□ -2.13
COL7A1Q02388 ACTR3BP6-201ENST00000422332 1241 ntBASIC1.77□□□□□ -2.13
COL7A1Q02388 MED4-AS1-201ENST00000422483 542 ntTSL 2 BASIC1.77□□□□□ -2.13
COL7A1Q02388 CREM-226ENST00000469949 721 ntTSL 3 BASIC1.77□□□□□ -2.13
COL7A1Q02388 AC068587.2-201ENST00000478386 781 ntBASIC1.77□□□□□ -2.13
COL7A1Q02388 RAD51AP1P1-201ENST00000484195 1001 ntBASIC1.77□□□□□ -2.13
COL7A1Q02388 ALDH7A1P3-201ENST00000492517 345 ntBASIC1.77□□□□□ -2.13
COL7A1Q02388 IGKV2D-23-201ENST00000518179 286 ntBASIC1.77□□□□□ -2.13
COL7A1Q02388 IGLVIV-53-201ENST00000520107 367 ntBASIC1.77□□□□□ -2.13
COL7A1Q02388 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.77□□□□□ -2.13
COL7A1Q02388 U4.3-201ENST00000621047 82 ntBASIC1.77□□□□□ -2.13
COL7A1Q02388 VPS8-228ENST00000628962 207 ntTSL 5 BASIC1.77□□□□□ -2.13
COL7A1Q02388 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC1.77□□□□□ -2.13
COL7A1Q02388 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC1.76□□□□□ -2.13
COL7A1Q02388 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC1.76□□□□□ -2.13
COL7A1Q02388 Z82209.1-201ENST00000422141 2135 ntBASIC1.76□□□□□ -2.13
COL7A1Q02388 AL023284.1-201ENST00000403956 276 ntBASIC1.76□□□□□ -2.13
COL7A1Q02388 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC1.76□□□□□ -2.13
COL7A1Q02388 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC1.76□□□□□ -2.13
COL7A1Q02388 RN7SKP43-201ENST00000516173 320 ntBASIC1.76□□□□□ -2.13
COL7A1Q02388 MIR2114-201ENST00000516645 80 ntBASIC1.76□□□□□ -2.13
COL7A1Q02388 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC1.76□□□□□ -2.13
COL7A1Q02388 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC1.76□□□□□ -2.13
COL7A1Q02388 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC1.76□□□□□ -2.13
COL7A1Q02388 MEG8-218ENST00000556720 456 ntTSL 3 BASIC1.76□□□□□ -2.13
COL7A1Q02388 AC009137.2-201ENST00000568179 641 ntTSL 3 BASIC1.76□□□□□ -2.13
COL7A1Q02388 AL359893.1-201ENST00000447628 1580 ntBASIC1.76□□□□□ -2.13
COL7A1Q02388 AC026523.2-201ENST00000625039 7739 ntBASIC1.76□□□□□ -2.13
COL7A1Q02388 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
COL7A1Q02388 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
COL7A1Q02388 GABPAP-201ENST00000419271 1356 ntBASIC1.76□□□□□ -2.13
COL7A1Q02388 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC1.76□□□□□ -2.13
COL7A1Q02388 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC1.76□□□□□ -2.13
COL7A1Q02388 EI24P2-201ENST00000397776 1076 ntBASIC1.76□□□□□ -2.13
COL7A1Q02388 RPL23AP48-201ENST00000406913 488 ntBASIC1.76□□□□□ -2.13
COL7A1Q02388 RNA5SP274-201ENST00000410484 108 ntBASIC1.76□□□□□ -2.13
COL7A1Q02388 RN7SKP247-201ENST00000411094 308 ntBASIC1.76□□□□□ -2.13
COL7A1Q02388 VDAC1P3-201ENST00000434069 851 ntBASIC1.76□□□□□ -2.13
COL7A1Q02388 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC1.76□□□□□ -2.13
COL7A1Q02388 AL354710.1-201ENST00000453641 246 ntBASIC1.76□□□□□ -2.13
COL7A1Q02388 RN7SL75P-201ENST00000461926 281 ntBASIC1.76□□□□□ -2.13
COL7A1Q02388 AC021146.1-201ENST00000511202 716 ntBASIC1.76□□□□□ -2.13
COL7A1Q02388 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC1.76□□□□□ -2.13
COL7A1Q02388 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC1.76□□□□□ -2.13
COL7A1Q02388 AC087897.2-201ENST00000552639 678 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
COL7A1Q02388 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC1.76□□□□□ -2.13
COL7A1Q02388 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC1.76□□□□□ -2.13
COL7A1Q02388 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC1.76□□□□□ -2.13
COL7A1Q02388 AP001521.1-201ENST00000609150 300 ntBASIC1.76□□□□□ -2.13
COL7A1Q02388 AC006111.3-201ENST00000622137 383 ntBASIC1.76□□□□□ -2.13
COL7A1Q02388 MIR6873-201ENST00000622788 63 ntBASIC1.76□□□□□ -2.13
COL7A1Q02388 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC1.76□□□□□ -2.13
COL7A1Q02388 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC1.76□□□□□ -2.13
COL7A1Q02388 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
COL7A1Q02388 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC1.75□□□□□ -2.13
COL7A1Q02388 RPL21P3-201ENST00000395517 478 ntBASIC1.75□□□□□ -2.13
COL7A1Q02388 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC1.75□□□□□ -2.13
COL7A1Q02388 AC011816.1-201ENST00000441346 546 ntBASIC1.75□□□□□ -2.13
COL7A1Q02388 SNORA64.4-201ENST00000516632 81 ntBASIC1.75□□□□□ -2.13
COL7A1Q02388 AC245166.1-201ENST00000521012 253 ntBASIC1.75□□□□□ -2.13
COL7A1Q02388 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC1.75□□□□□ -2.13
COL7A1Q02388 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC1.75□□□□□ -2.13
COL7A1Q02388 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.75□□□□□ -2.13
COL7A1Q02388 AC011494.1-201ENST00000596454 237 ntBASIC1.75□□□□□ -2.13
COL7A1Q02388 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC1.75□□□□□ -2.13
COL7A1Q02388 snoU13.31-201ENST00000607291 104 ntBASIC1.75□□□□□ -2.13
COL7A1Q02388 AL162233.1-201ENST00000620014 944 ntBASIC1.75□□□□□ -2.13
COL7A1Q02388 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC1.75□□□□□ -2.13
COL7A1Q02388 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
COL7A1Q02388 ADAM3A-203ENST00000461344 2157 ntBASIC1.75□□□□□ -2.13
COL7A1Q02388 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
COL7A1Q02388 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC1.75□□□□□ -2.13
COL7A1Q02388 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
COL7A1Q02388 SNORA26.9-201ENST00000391322 122 ntBASIC1.75□□□□□ -2.13
COL7A1Q02388 RNA5SP107-201ENST00000411358 122 ntBASIC1.75□□□□□ -2.13
COL7A1Q02388 AC107081.1-201ENST00000414975 361 ntBASIC1.75□□□□□ -2.13
COL7A1Q02388 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC1.75□□□□□ -2.13
COL7A1Q02388 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
COL7A1Q02388 AC092436.3-201ENST00000511788 257 ntBASIC1.75□□□□□ -2.13
COL7A1Q02388 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC1.75□□□□□ -2.13
COL7A1Q02388 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC1.75□□□□□ -2.13
COL7A1Q02388 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC1.75□□□□□ -2.13
COL7A1Q02388 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC1.75□□□□□ -2.13
COL7A1Q02388 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC1.75□□□□□ -2.13
COL7A1Q02388 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC1.75□□□□□ -2.13
COL7A1Q02388 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
COL7A1Q02388 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
COL7A1Q02388 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC1.74□□□□□ -2.13
COL7A1Q02388 OR6C4-201ENST00000394256 1046 ntAPPRIS P1 BASIC1.74□□□□□ -2.13
COL7A1Q02388 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC1.74□□□□□ -2.13
COL7A1Q02388 AC245291.1-201ENST00000419501 328 ntBASIC1.74□□□□□ -2.13
COL7A1Q02388 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC1.74□□□□□ -2.13
COL7A1Q02388 AC006539.3-201ENST00000454258 129 ntBASIC1.74□□□□□ -2.13
COL7A1Q02388 AC016687.1-201ENST00000482574 353 ntBASIC1.74□□□□□ -2.13
COL7A1Q02388 AC118282.1-201ENST00000506408 765 ntBASIC1.74□□□□□ -2.13
COL7A1Q02388 RNA5SP480-201ENST00000516840 109 ntBASIC1.74□□□□□ -2.13
COL7A1Q02388 FAM60DP-201ENST00000524174 632 ntBASIC1.74□□□□□ -2.13
COL7A1Q02388 MIR4635-201ENST00000583759 79 ntBASIC1.74□□□□□ -2.13
COL7A1Q02388 AC078899.5-201ENST00000612475 178 ntBASIC1.74□□□□□ -2.13
COL7A1Q02388 MIR6779-201ENST00000617283 64 ntBASIC1.74□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 70.6 ms