Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 MTCO2P27-201ENST00000420740 428 ntBASIC5.1□□□□□ -1.59
RNF4P78317 RPL12P17-201ENST00000432393 498 ntBASIC5.1□□□□□ -1.59
RNF4P78317 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC5.1□□□□□ -1.59
RNF4P78317 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
RNF4P78317 FGF7P3-201ENST00000454645 303 ntBASIC5.1□□□□□ -1.59
RNF4P78317 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC5.1□□□□□ -1.59
RNF4P78317 RNU7-180P-201ENST00000459240 63 ntBASIC5.1□□□□□ -1.59
RNF4P78317 RN7SL515P-201ENST00000463999 297 ntBASIC5.1□□□□□ -1.59
RNF4P78317 AC083904.1-201ENST00000487828 231 ntBASIC5.1□□□□□ -1.59
RNF4P78317 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC5.1□□□□□ -1.59
RNF4P78317 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC5.1□□□□□ -1.59
RNF4P78317 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
RNF4P78317 AC017037.2-201ENST00000513850 890 ntBASIC5.1□□□□□ -1.59
RNF4P78317 BX510359.5-201ENST00000515651 304 ntBASIC5.1□□□□□ -1.59
RNF4P78317 SNORA25.17-201ENST00000517184 124 ntBASIC5.1□□□□□ -1.59
RNF4P78317 IGKV2-18-201ENST00000522607 343 ntBASIC5.1□□□□□ -1.59
RNF4P78317 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC5.1□□□□□ -1.59
RNF4P78317 AC109635.4-202ENST00000531666 412 ntBASIC5.1□□□□□ -1.59
RNF4P78317 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC5.1□□□□□ -1.59
RNF4P78317 ELOCP31-201ENST00000540463 467 ntBASIC5.1□□□□□ -1.59
RNF4P78317 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC5.1□□□□□ -1.59
RNF4P78317 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC5.1□□□□□ -1.59
RNF4P78317 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC5.1□□□□□ -1.59
RNF4P78317 AL133153.1-201ENST00000557756 303 ntBASIC5.1□□□□□ -1.59
RNF4P78317 AC007225.2-201ENST00000562529 256 ntBASIC5.1□□□□□ -1.59
RNF4P78317 MIR4703-201ENST00000577728 79 ntBASIC5.1□□□□□ -1.59
RNF4P78317 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC5.1□□□□□ -1.59
RNF4P78317 MIR3176-201ENST00000582210 90 ntBASIC5.1□□□□□ -1.59
RNF4P78317 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC5.1□□□□□ -1.59
RNF4P78317 AC009597.2-201ENST00000604659 592 ntBASIC5.1□□□□□ -1.59
RNF4P78317 AC080078.3-201ENST00000605407 463 ntBASIC5.1□□□□□ -1.59
RNF4P78317 AL022345.1-201ENST00000607292 135 ntBASIC5.1□□□□□ -1.59
RNF4P78317 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC5.1□□□□□ -1.59
RNF4P78317 AC133644.2-201ENST00000608142 540 ntBASIC5.1□□□□□ -1.59
RNF4P78317 AC109309.2-201ENST00000612597 332 ntBASIC5.1□□□□□ -1.59
RNF4P78317 AC040168.1-201ENST00000623594 991 ntBASIC5.1□□□□□ -1.59
RNF4P78317 AL359757.2-201ENST00000624309 274 ntBASIC5.1□□□□□ -1.59
RNF4P78317 AC091925.2-201ENST00000625059 256 ntBASIC5.1□□□□□ -1.59
RNF4P78317 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC5.1□□□□□ -1.59
RNF4P78317 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC5.1□□□□□ -1.59
RNF4P78317 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC5.1□□□□□ -1.59
RNF4P78317 MAPK10-328ENST00000641553 4009 ntBASIC5.1□□□□□ -1.59
RNF4P78317 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC5.1□□□□□ -1.59
RNF4P78317 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
RNF4P78317 AC011978.2-201ENST00000569835 2054 ntBASIC5.09□□□□□ -1.59
RNF4P78317 AC004076.2-201ENST00000620532 3323 ntBASIC5.09□□□□□ -1.59
RNF4P78317 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC5.09□□□□□ -1.59
RNF4P78317 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC5.09□□□□□ -1.59
RNF4P78317 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC5.09□□□□□ -1.59
RNF4P78317 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
RNF4P78317 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC5.09□□□□□ -1.59
RNF4P78317 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC5.09□□□□□ -1.59
RNF4P78317 SNORD42.2-201ENST00000365570 69 ntBASIC5.09□□□□□ -1.59
RNF4P78317 MIR559-201ENST00000385188 96 ntBASIC5.09□□□□□ -1.59
RNF4P78317 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
RNF4P78317 AL136372.1-201ENST00000403060 228 ntBASIC5.09□□□□□ -1.59
RNF4P78317 AL391361.1-201ENST00000405580 489 ntBASIC5.09□□□□□ -1.59
RNF4P78317 RNU2-29P-201ENST00000410423 189 ntBASIC5.09□□□□□ -1.59
RNF4P78317 RN7SKP229-201ENST00000410465 302 ntBASIC5.09□□□□□ -1.59
RNF4P78317 AL161631.1-201ENST00000417933 486 ntBASIC5.09□□□□□ -1.59
RNF4P78317 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC5.09□□□□□ -1.59
RNF4P78317 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC5.09□□□□□ -1.59
RNF4P78317 GTF2IP13-201ENST00000438487 386 ntBASIC5.09□□□□□ -1.59
RNF4P78317 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC5.09□□□□□ -1.59
RNF4P78317 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC5.09□□□□□ -1.59
RNF4P78317 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC5.09□□□□□ -1.59
RNF4P78317 TRAPPC2P3-201ENST00000443200 321 ntBASIC5.09□□□□□ -1.59
RNF4P78317 Z95327.1-201ENST00000446082 482 ntBASIC5.09□□□□□ -1.59
RNF4P78317 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC5.09□□□□□ -1.59
RNF4P78317 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC5.09□□□□□ -1.59
RNF4P78317 MTND1P9-201ENST00000453775 944 ntBASIC5.09□□□□□ -1.59
RNF4P78317 CBX1P2-201ENST00000453841 458 ntBASIC5.09□□□□□ -1.59
RNF4P78317 AZGP1P2-201ENST00000454506 345 ntBASIC5.09□□□□□ -1.59
RNF4P78317 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC5.09□□□□□ -1.59
RNF4P78317 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC5.09□□□□□ -1.59
RNF4P78317 AL133445.1-201ENST00000467051 452 ntBASIC5.09□□□□□ -1.59
RNF4P78317 AC053481.1-201ENST00000467217 306 ntBASIC5.09□□□□□ -1.59
RNF4P78317 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC5.09□□□□□ -1.59
RNF4P78317 GLUD1P3-202ENST00000508551 200 ntBASIC5.09□□□□□ -1.59
RNF4P78317 MTCO3P44-201ENST00000510977 541 ntBASIC5.09□□□□□ -1.59
RNF4P78317 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC5.09□□□□□ -1.59
RNF4P78317 RNU2-10P-201ENST00000516375 211 ntBASIC5.09□□□□□ -1.59
RNF4P78317 Y_RNA.718-201ENST00000517110 102 ntBASIC5.09□□□□□ -1.59
RNF4P78317 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC5.09□□□□□ -1.59
RNF4P78317 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC5.09□□□□□ -1.59
RNF4P78317 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC5.09□□□□□ -1.59
RNF4P78317 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
RNF4P78317 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC5.09□□□□□ -1.59
RNF4P78317 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC5.09□□□□□ -1.59
RNF4P78317 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC5.09□□□□□ -1.59
RNF4P78317 AP005403.1-201ENST00000579720 229 ntBASIC5.09□□□□□ -1.59
RNF4P78317 MIR4424-201ENST00000585257 86 ntBASIC5.09□□□□□ -1.59
RNF4P78317 MIR3942-201ENST00000585264 109 ntBASIC5.09□□□□□ -1.59
RNF4P78317 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC5.09□□□□□ -1.59
RNF4P78317 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC5.09□□□□□ -1.59
RNF4P78317 AL022099.1-201ENST00000604551 712 ntBASIC5.09□□□□□ -1.59
RNF4P78317 APOOP1-201ENST00000604695 592 ntBASIC5.09□□□□□ -1.59
RNF4P78317 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC5.09□□□□□ -1.59
RNF4P78317 AC000068.2-201ENST00000608816 460 ntBASIC5.09□□□□□ -1.59
RNF4P78317 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC5.09□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 110.1 ms