Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 CDC42EP3P1-201ENST00000601004 764 ntBASIC5.55□□□□□ -1.52
LIG3P49916 AC007566.2-201ENST00000603642 413 ntBASIC5.55□□□□□ -1.52
LIG3P49916 AL590099.1-201ENST00000615276 138 ntBASIC5.55□□□□□ -1.52
LIG3P49916 AC244100.1-202ENST00000621554 382 ntBASIC5.55□□□□□ -1.52
LIG3P49916 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC5.55□□□□□ -1.52
LIG3P49916 AC073869.10-201ENST00000642016 354 ntBASIC5.55□□□□□ -1.52
LIG3P49916 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
LIG3P49916 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC5.55□□□□□ -1.52
LIG3P49916 ST7-212ENST00000422922 1887 ntTSL 5 BASIC5.55□□□□□ -1.52
LIG3P49916 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
LIG3P49916 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC5.55□□□□□ -1.52
LIG3P49916 AC027228.2-201ENST00000567141 2154 ntBASIC5.55□□□□□ -1.52
LIG3P49916 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC5.55□□□□□ -1.52
LIG3P49916 ANAPC1P1-201ENST00000426186 2145 ntBASIC5.54□□□□□ -1.52
LIG3P49916 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
LIG3P49916 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
LIG3P49916 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
LIG3P49916 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
LIG3P49916 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
LIG3P49916 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
LIG3P49916 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
LIG3P49916 U3.11-201ENST00000364476 212 ntBASIC5.54□□□□□ -1.52
LIG3P49916 RNU6-39P-201ENST00000384344 107 ntBASIC5.54□□□□□ -1.52
LIG3P49916 RNU6-692P-201ENST00000384496 107 ntBASIC5.54□□□□□ -1.52
LIG3P49916 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
LIG3P49916 RPL32P23-201ENST00000397237 405 ntBASIC5.54□□□□□ -1.52
LIG3P49916 AL590004.1-201ENST00000405321 300 ntBASIC5.54□□□□□ -1.52
LIG3P49916 TXNP7-201ENST00000406296 293 ntBASIC5.54□□□□□ -1.52
LIG3P49916 RN7SKP247-201ENST00000411094 308 ntBASIC5.54□□□□□ -1.52
LIG3P49916 RN7SKP140-201ENST00000411196 284 ntBASIC5.54□□□□□ -1.52
LIG3P49916 HMGN1P24-201ENST00000412282 298 ntBASIC5.54□□□□□ -1.52
LIG3P49916 MTND3P8-201ENST00000412909 339 ntBASIC5.54□□□□□ -1.52
LIG3P49916 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC5.54□□□□□ -1.52
LIG3P49916 AC104333.2-201ENST00000422630 192 ntBASIC5.54□□□□□ -1.52
LIG3P49916 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC5.54□□□□□ -1.52
LIG3P49916 RPS26P47-201ENST00000427219 348 ntBASIC5.54□□□□□ -1.52
LIG3P49916 OR4F13P-201ENST00000428478 931 ntBASIC5.54□□□□□ -1.52
LIG3P49916 AC005534.2-201ENST00000431047 433 ntBASIC5.54□□□□□ -1.52
LIG3P49916 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
LIG3P49916 CFL1P1-202ENST00000432948 411 ntBASIC5.54□□□□□ -1.52
LIG3P49916 RPL19P16-201ENST00000433839 588 ntBASIC5.54□□□□□ -1.52
LIG3P49916 IFNA20P-201ENST00000436840 528 ntBASIC5.54□□□□□ -1.52
LIG3P49916 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC5.54□□□□□ -1.52
LIG3P49916 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC5.54□□□□□ -1.52
LIG3P49916 AL121877.1-201ENST00000453704 622 ntBASIC5.54□□□□□ -1.52
LIG3P49916 MTND1P9-201ENST00000453775 944 ntBASIC5.54□□□□□ -1.52
LIG3P49916 AC233279.1-201ENST00000455300 423 ntBASIC5.54□□□□□ -1.52
LIG3P49916 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC5.54□□□□□ -1.52
LIG3P49916 SNORD121B-201ENST00000458838 81 ntBASIC5.54□□□□□ -1.52
LIG3P49916 MRPS17P3-201ENST00000465453 385 ntBASIC5.54□□□□□ -1.52
LIG3P49916 RPS26P39-201ENST00000469206 341 ntBASIC5.54□□□□□ -1.52
LIG3P49916 RN7SL583P-201ENST00000475692 287 ntBASIC5.54□□□□□ -1.52
LIG3P49916 RN7SL809P-201ENST00000482040 297 ntBASIC5.54□□□□□ -1.52
LIG3P49916 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC5.54□□□□□ -1.52
LIG3P49916 NACA-211ENST00000548563 827 ntTSL 5 BASIC5.54□□□□□ -1.52
LIG3P49916 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC5.54□□□□□ -1.52
LIG3P49916 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC5.54□□□□□ -1.52
LIG3P49916 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC5.54□□□□□ -1.52
LIG3P49916 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC5.54□□□□□ -1.52
LIG3P49916 AC108738.1-201ENST00000603703 237 ntBASIC5.54□□□□□ -1.52
LIG3P49916 AC004908.2-201ENST00000609090 574 ntBASIC5.54□□□□□ -1.52
LIG3P49916 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC5.54□□□□□ -1.52
LIG3P49916 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC5.54□□□□□ -1.52
LIG3P49916 AC037198.3-201ENST00000616754 526 ntBASIC5.54□□□□□ -1.52
LIG3P49916 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
LIG3P49916 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC5.54□□□□□ -1.52
LIG3P49916 DHX40P1-201ENST00000588725 1412 ntBASIC5.54□□□□□ -1.52
LIG3P49916 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
LIG3P49916 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
LIG3P49916 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC5.54□□□□□ -1.52
LIG3P49916 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
LIG3P49916 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC5.53□□□□□ -1.52
LIG3P49916 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC5.53□□□□□ -1.52
LIG3P49916 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC5.53□□□□□ -1.52
LIG3P49916 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
LIG3P49916 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
LIG3P49916 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
LIG3P49916 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
LIG3P49916 RNU1-146P-201ENST00000364015 165 ntBASIC5.53□□□□□ -1.52
LIG3P49916 RNU6-278P-201ENST00000390945 109 ntBASIC5.53□□□□□ -1.52
LIG3P49916 AC005522.1-201ENST00000395416 346 ntBASIC5.53□□□□□ -1.52
LIG3P49916 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC5.53□□□□□ -1.52
LIG3P49916 USP9YP20-201ENST00000419224 558 ntBASIC5.53□□□□□ -1.52
LIG3P49916 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC5.53□□□□□ -1.52
LIG3P49916 MTCYBP8-201ENST00000422855 651 ntBASIC5.53□□□□□ -1.52
LIG3P49916 AC007161.1-204ENST00000423039 460 ntBASIC5.53□□□□□ -1.52
LIG3P49916 SAR1AP4-201ENST00000429225 591 ntBASIC5.53□□□□□ -1.52
LIG3P49916 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC5.53□□□□□ -1.52
LIG3P49916 RPL21P89-201ENST00000444021 467 ntBASIC5.53□□□□□ -1.52
LIG3P49916 AL353691.1-201ENST00000451332 387 ntBASIC5.53□□□□□ -1.52
LIG3P49916 HMGN2P26-201ENST00000463169 339 ntBASIC5.53□□□□□ -1.52
LIG3P49916 RPL5P22-201ENST00000480199 884 ntBASIC5.53□□□□□ -1.52
LIG3P49916 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
LIG3P49916 HMGB1P21-201ENST00000502313 581 ntBASIC5.53□□□□□ -1.52
LIG3P49916 AC020893.1-201ENST00000502452 580 ntBASIC5.53□□□□□ -1.52
LIG3P49916 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
LIG3P49916 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC5.53□□□□□ -1.52
LIG3P49916 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC5.53□□□□□ -1.52
LIG3P49916 RNU4-29P-201ENST00000515943 174 ntBASIC5.53□□□□□ -1.52
LIG3P49916 RNA5SP464-201ENST00000516251 108 ntBASIC5.53□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 113.8 ms