Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 CCPG1-202ENST00000425574 1945 ntTSL 2 BASIC3.61□□□□□ -1.83
HOXA1P49639 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC3.61□□□□□ -1.83
HOXA1P49639 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
HOXA1P49639 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
HOXA1P49639 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC3.6□□□□□ -1.83
HOXA1P49639 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
HOXA1P49639 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.6□□□□□ -1.83
HOXA1P49639 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
HOXA1P49639 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
HOXA1P49639 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
HOXA1P49639 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC3.6□□□□□ -1.83
HOXA1P49639 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
HOXA1P49639 RNA5SP191-201ENST00000362585 102 ntBASIC3.6□□□□□ -1.83
HOXA1P49639 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
HOXA1P49639 SNORA75-201ENST00000384158 137 ntBASIC3.6□□□□□ -1.83
HOXA1P49639 U8.14-201ENST00000390843 143 ntBASIC3.6□□□□□ -1.83
HOXA1P49639 RPL31P1-201ENST00000398116 372 ntBASIC3.6□□□□□ -1.83
HOXA1P49639 SSXP10-201ENST00000402595 565 ntBASIC3.6□□□□□ -1.83
HOXA1P49639 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC3.6□□□□□ -1.83
HOXA1P49639 MIR1178-201ENST00000408396 91 ntBASIC3.6□□□□□ -1.83
HOXA1P49639 RSU1P3-201ENST00000412878 835 ntBASIC3.6□□□□□ -1.83
HOXA1P49639 RPS23P10-201ENST00000416185 486 ntBASIC3.6□□□□□ -1.83
HOXA1P49639 BX510359.2-201ENST00000417920 305 ntBASIC3.6□□□□□ -1.83
HOXA1P49639 AC079760.2-203ENST00000418395 489 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXA1P49639 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC3.6□□□□□ -1.83
HOXA1P49639 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXA1P49639 AL445669.1-201ENST00000426743 755 ntBASIC3.6□□□□□ -1.83
HOXA1P49639 VN1R54P-201ENST00000435210 1049 ntBASIC3.6□□□□□ -1.83
HOXA1P49639 AC083863.1-201ENST00000438811 231 ntBASIC3.6□□□□□ -1.83
HOXA1P49639 MTND5P14-201ENST00000441481 1267 ntBASIC3.6□□□□□ -1.83
HOXA1P49639 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXA1P49639 GDI2P2-201ENST00000445131 608 ntBASIC3.6□□□□□ -1.83
HOXA1P49639 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXA1P49639 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXA1P49639 MTCO1P27-201ENST00000448269 226 ntBASIC3.6□□□□□ -1.83
HOXA1P49639 MTND1P27-201ENST00000451117 902 ntBASIC3.6□□□□□ -1.83
HOXA1P49639 TRBV26-201ENST00000456572 344 ntBASIC3.6□□□□□ -1.83
HOXA1P49639 BTF3P5-201ENST00000457252 467 ntBASIC3.6□□□□□ -1.83
HOXA1P49639 AC091564.1-201ENST00000464563 479 ntBASIC3.6□□□□□ -1.83
HOXA1P49639 AC063943.1-201ENST00000465434 453 ntBASIC3.6□□□□□ -1.83
HOXA1P49639 AP001086.1-201ENST00000494882 321 ntBASIC3.6□□□□□ -1.83
HOXA1P49639 AC114981.1-201ENST00000503897 678 ntBASIC3.6□□□□□ -1.83
HOXA1P49639 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXA1P49639 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXA1P49639 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.6□□□□□ -1.83
HOXA1P49639 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC3.6□□□□□ -1.83
HOXA1P49639 MTCO2P32-201ENST00000514865 403 ntBASIC3.6□□□□□ -1.83
HOXA1P49639 RN7SKP276-201ENST00000516242 268 ntBASIC3.6□□□□□ -1.83
HOXA1P49639 AC025881.1-201ENST00000518851 512 ntBASIC3.6□□□□□ -1.83
HOXA1P49639 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXA1P49639 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC3.6□□□□□ -1.83
HOXA1P49639 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXA1P49639 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
HOXA1P49639 ZDHHC20P3-201ENST00000531576 336 ntBASIC3.6□□□□□ -1.83
HOXA1P49639 AC008033.2-201ENST00000542626 177 ntBASIC3.6□□□□□ -1.83
HOXA1P49639 AL391156.1-201ENST00000554965 554 ntBASIC3.6□□□□□ -1.83
HOXA1P49639 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.6□□□□□ -1.83
HOXA1P49639 BGLT3-201ENST00000564523 994 ntBASIC3.6□□□□□ -1.83
HOXA1P49639 AC091489.2-201ENST00000566263 604 ntBASIC3.6□□□□□ -1.83
HOXA1P49639 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC3.6□□□□□ -1.83
HOXA1P49639 MIR544B-201ENST00000582372 78 ntBASIC3.6□□□□□ -1.83
HOXA1P49639 MIR4512-201ENST00000583257 77 ntBASIC3.6□□□□□ -1.83
HOXA1P49639 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC3.6□□□□□ -1.83
HOXA1P49639 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
HOXA1P49639 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXA1P49639 DEFB131E-202ENST00000602581 683 ntBASIC3.6□□□□□ -1.83
HOXA1P49639 BPIFA4P-203ENST00000603168 689 ntBASIC3.6□□□□□ -1.83
HOXA1P49639 AL160290.3-201ENST00000604869 165 ntBASIC3.6□□□□□ -1.83
HOXA1P49639 AC010201.1-201ENST00000605051 540 ntBASIC3.6□□□□□ -1.83
HOXA1P49639 AC004492.1-201ENST00000607036 742 ntBASIC3.6□□□□□ -1.83
HOXA1P49639 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXA1P49639 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
HOXA1P49639 AL133243.1-201ENST00000614487 366 ntBASIC3.6□□□□□ -1.83
HOXA1P49639 AC025588.4-201ENST00000615802 908 ntBASIC3.6□□□□□ -1.83
HOXA1P49639 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
HOXA1P49639 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC3.6□□□□□ -1.83
HOXA1P49639 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
HOXA1P49639 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC3.6□□□□□ -1.83
HOXA1P49639 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC3.6□□□□□ -1.83
HOXA1P49639 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXA1P49639 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
HOXA1P49639 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.6□□□□□ -1.83
HOXA1P49639 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
HOXA1P49639 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
HOXA1P49639 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.59□□□□□ -1.83
HOXA1P49639 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC3.59□□□□□ -1.83
HOXA1P49639 OTUD4P1-201ENST00000237841 3067 ntBASIC3.59□□□□□ -1.83
HOXA1P49639 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
HOXA1P49639 Y_RNA.505-201ENST00000384489 102 ntBASIC3.59□□□□□ -1.83
HOXA1P49639 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC3.59□□□□□ -1.83
HOXA1P49639 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC3.59□□□□□ -1.83
HOXA1P49639 AC127526.1-201ENST00000417526 366 ntBASIC3.59□□□□□ -1.83
HOXA1P49639 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC3.59□□□□□ -1.83
HOXA1P49639 AL389915.1-201ENST00000422463 466 ntBASIC3.59□□□□□ -1.83
HOXA1P49639 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
HOXA1P49639 AL512649.1-201ENST00000428997 581 ntBASIC3.59□□□□□ -1.83
HOXA1P49639 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC3.59□□□□□ -1.83
HOXA1P49639 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC3.59□□□□□ -1.83
HOXA1P49639 RPS24P1-201ENST00000438550 371 ntBASIC3.59□□□□□ -1.83
HOXA1P49639 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC3.59□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 93.4 ms