Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC3.72□□□□□ -1.81
HOXD3P31249 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC3.72□□□□□ -1.81
HOXD3P31249 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC3.72□□□□□ -1.81
HOXD3P31249 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC3.72□□□□□ -1.81
HOXD3P31249 YWHAQP7-201ENST00000603536 658 ntBASIC3.72□□□□□ -1.81
HOXD3P31249 AC025588.3-201ENST00000604182 274 ntBASIC3.72□□□□□ -1.81
HOXD3P31249 AL121932.1-201ENST00000605542 214 ntBASIC3.72□□□□□ -1.81
HOXD3P31249 FAM27B-201ENST00000610601 213 ntBASIC3.72□□□□□ -1.81
HOXD3P31249 MIR6853-201ENST00000619642 74 ntBASIC3.72□□□□□ -1.81
HOXD3P31249 AC009318.4-201ENST00000620496 486 ntBASIC3.72□□□□□ -1.81
HOXD3P31249 AL023881.1-201ENST00000621088 301 ntBASIC3.72□□□□□ -1.81
HOXD3P31249 AL356321.1-201ENST00000621360 228 ntBASIC3.72□□□□□ -1.81
HOXD3P31249 PISRT1-201ENST00000626175 531 ntBASIC3.72□□□□□ -1.81
HOXD3P31249 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC3.72□□□□□ -1.81
HOXD3P31249 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC3.72□□□□□ -1.81
HOXD3P31249 AC107068.1-201ENST00000563286 4218 ntBASIC3.72□□□□□ -1.81
HOXD3P31249 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
HOXD3P31249 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
HOXD3P31249 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC3.72□□□□□ -1.81
HOXD3P31249 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC3.72□□□□□ -1.81
HOXD3P31249 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
HOXD3P31249 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
HOXD3P31249 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.71□□□□□ -1.81
HOXD3P31249 GHR-202ENST00000357703 4316 ntTSL 5 BASIC3.71□□□□□ -1.81
HOXD3P31249 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC3.71□□□□□ -1.81
HOXD3P31249 AC026951.1-201ENST00000559530 2459 ntBASIC3.71□□□□□ -1.81
HOXD3P31249 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC3.71□□□□□ -1.82
HOXD3P31249 AC009643.2-201ENST00000603543 1448 ntBASIC3.71□□□□□ -1.82
HOXD3P31249 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
HOXD3P31249 AC010300.1-201ENST00000600671 5134 ntBASIC3.71□□□□□ -1.82
HOXD3P31249 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC3.71□□□□□ -1.82
HOXD3P31249 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC3.71□□□□□ -1.82
HOXD3P31249 AL592148.3-201ENST00000608771 2646 ntBASIC3.71□□□□□ -1.82
HOXD3P31249 AC009951.1-201ENST00000623674 2614 ntBASIC3.71□□□□□ -1.82
HOXD3P31249 GNG5P1-201ENST00000255500 204 ntBASIC3.71□□□□□ -1.82
HOXD3P31249 RNU6-28P-201ENST00000362378 107 ntBASIC3.71□□□□□ -1.82
HOXD3P31249 Y_RNA.303-201ENST00000364998 94 ntBASIC3.71□□□□□ -1.82
HOXD3P31249 SNORD82-201ENST00000365530 70 ntBASIC3.71□□□□□ -1.82
HOXD3P31249 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC3.71□□□□□ -1.82
HOXD3P31249 Y_RNA.409-201ENST00000383990 98 ntBASIC3.71□□□□□ -1.82
HOXD3P31249 RPA3-203ENST00000401447 414 ntTSL 3 BASIC3.71□□□□□ -1.82
HOXD3P31249 AL049693.1-201ENST00000402760 611 ntBASIC3.71□□□□□ -1.82
HOXD3P31249 RPL7P25-201ENST00000404151 721 ntBASIC3.71□□□□□ -1.82
HOXD3P31249 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC3.71□□□□□ -1.82
HOXD3P31249 AC004690.1-201ENST00000418216 328 ntBASIC3.71□□□□□ -1.82
HOXD3P31249 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC3.71□□□□□ -1.82
HOXD3P31249 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC3.71□□□□□ -1.82
HOXD3P31249 MTCO2P5-201ENST00000422621 426 ntBASIC3.71□□□□□ -1.82
HOXD3P31249 AC073464.1-201ENST00000429823 534 ntBASIC3.71□□□□□ -1.82
HOXD3P31249 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC3.71□□□□□ -1.82
HOXD3P31249 NRBF2P3-201ENST00000432731 865 ntBASIC3.71□□□□□ -1.82
HOXD3P31249 BTF3P10-201ENST00000433415 495 ntBASIC3.71□□□□□ -1.82
HOXD3P31249 RPS17P8-201ENST00000434525 335 ntBASIC3.71□□□□□ -1.82
HOXD3P31249 AL662791.1-201ENST00000441992 928 ntBASIC3.71□□□□□ -1.82
HOXD3P31249 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC3.71□□□□□ -1.82
HOXD3P31249 PSPHP1-201ENST00000450062 261 ntBASIC3.71□□□□□ -1.82
HOXD3P31249 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC3.71□□□□□ -1.82
HOXD3P31249 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC3.71□□□□□ -1.82
HOXD3P31249 RPS23P7-201ENST00000466210 444 ntBASIC3.71□□□□□ -1.82
HOXD3P31249 AC022034.3-201ENST00000471393 478 ntBASIC3.71□□□□□ -1.82
HOXD3P31249 AC013356.1-201ENST00000489027 564 ntBASIC3.71□□□□□ -1.82
HOXD3P31249 RN7SL558P-201ENST00000497468 299 ntBASIC3.71□□□□□ -1.82
HOXD3P31249 AK3P4-201ENST00000504283 583 ntBASIC3.71□□□□□ -1.82
HOXD3P31249 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC3.71□□□□□ -1.82
HOXD3P31249 RNA5SP392-201ENST00000516905 112 ntBASIC3.71□□□□□ -1.82
HOXD3P31249 RPL23AP53-201ENST00000521854 457 ntBASIC3.71□□□□□ -1.82
HOXD3P31249 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC3.71□□□□□ -1.82
HOXD3P31249 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC3.71□□□□□ -1.82
HOXD3P31249 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC3.71□□□□□ -1.82
HOXD3P31249 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
HOXD3P31249 AK6P1-201ENST00000540219 478 ntBASIC3.71□□□□□ -1.82
HOXD3P31249 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC3.71□□□□□ -1.82
HOXD3P31249 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC3.71□□□□□ -1.82
HOXD3P31249 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC3.71□□□□□ -1.82
HOXD3P31249 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC3.71□□□□□ -1.82
HOXD3P31249 AC133555.2-201ENST00000550213 292 ntBASIC3.71□□□□□ -1.82
HOXD3P31249 PARP1P2-201ENST00000556806 195 ntBASIC3.71□□□□□ -1.82
HOXD3P31249 MIR4277-201ENST00000578298 84 ntBASIC3.71□□□□□ -1.82
HOXD3P31249 AC233702.9-201ENST00000581528 203 ntBASIC3.71□□□□□ -1.82
HOXD3P31249 MIR5096-201ENST00000583713 70 ntBASIC3.71□□□□□ -1.82
HOXD3P31249 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC3.71□□□□□ -1.82
HOXD3P31249 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC3.71□□□□□ -1.82
HOXD3P31249 AP000907.4-201ENST00000604143 237 ntBASIC3.71□□□□□ -1.82
HOXD3P31249 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
HOXD3P31249 AC019193.2-201ENST00000610012 634 ntBASIC3.71□□□□□ -1.82
HOXD3P31249 AC007497.1-201ENST00000610421 561 ntBASIC3.71□□□□□ -1.82
HOXD3P31249 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
HOXD3P31249 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
HOXD3P31249 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
HOXD3P31249 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC3.71□□□□□ -1.82
HOXD3P31249 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC3.71□□□□□ -1.82
HOXD3P31249 MLECP1-201ENST00000615893 709 ntBASIC3.71□□□□□ -1.82
HOXD3P31249 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC3.71□□□□□ -1.82
HOXD3P31249 AL022401.1-201ENST00000619498 108 ntBASIC3.71□□□□□ -1.82
HOXD3P31249 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
HOXD3P31249 LRRC77P-213ENST00000637727 880 ntBASIC3.71□□□□□ -1.82
HOXD3P31249 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC3.71□□□□□ -1.82
HOXD3P31249 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC3.71□□□□□ -1.82
HOXD3P31249 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC3.71□□□□□ -1.82
HOXD3P31249 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC3.71□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 110.6 ms