Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC2.53□□□□□ -2
VCANP13611 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC2.53□□□□□ -2
VCANP13611 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC2.53□□□□□ -2
VCANP13611 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC2.53□□□□□ -2
VCANP13611 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC2.53□□□□□ -2
VCANP13611 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC2.53□□□□□ -2
VCANP13611 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC2.53□□□□□ -2
VCANP13611 AC026241.1-201ENST00000517873 2142 ntBASIC2.53□□□□□ -2
VCANP13611 AK6P1-201ENST00000540219 478 ntBASIC2.53□□□□□ -2
VCANP13611 AC011978.2-201ENST00000569835 2054 ntBASIC2.53□□□□□ -2.01
VCANP13611 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC2.53□□□□□ -2.01
VCANP13611 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC2.52□□□□□ -2.01
VCANP13611 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
VCANP13611 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC2.52□□□□□ -2.01
VCANP13611 NDUFB4P6-201ENST00000436819 366 ntBASIC2.52□□□□□ -2.01
VCANP13611 AC118282.1-201ENST00000506408 765 ntBASIC2.52□□□□□ -2.01
VCANP13611 RNA5SP281-201ENST00000516504 135 ntBASIC2.52□□□□□ -2.01
VCANP13611 METTL8-218ENST00000638989 876 ntTSL 5 BASIC2.52□□□□□ -2.01
VCANP13611 METTL8-219ENST00000640734 726 ntTSL 2 BASIC2.52□□□□□ -2.01
VCANP13611 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
VCANP13611 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC2.52□□□□□ -2.01
VCANP13611 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.52□□□□□ -2.01
VCANP13611 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC2.52□□□□□ -2.01
VCANP13611 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC2.52□□□□□ -2.01
VCANP13611 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC2.52□□□□□ -2.01
VCANP13611 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC2.52□□□□□ -2.01
VCANP13611 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC2.52□□□□□ -2.01
VCANP13611 RNU6-457P-201ENST00000363999 107 ntBASIC2.52□□□□□ -2.01
VCANP13611 HSPE1P16-201ENST00000426640 348 ntBASIC2.52□□□□□ -2.01
VCANP13611 OR5H3P-201ENST00000502817 919 ntBASIC2.52□□□□□ -2.01
VCANP13611 AC009137.2-201ENST00000568179 641 ntTSL 3 BASIC2.52□□□□□ -2.01
VCANP13611 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
VCANP13611 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.52□□□□□ -2.01
VCANP13611 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC2.52□□□□□ -2.01
VCANP13611 RNU1-35P-201ENST00000362782 153 ntBASIC2.52□□□□□ -2.01
VCANP13611 RNU6-392P-201ENST00000364926 101 ntBASIC2.52□□□□□ -2.01
VCANP13611 MIR137-201ENST00000385223 102 ntBASIC2.52□□□□□ -2.01
VCANP13611 AC073587.1-201ENST00000447093 876 ntBASIC2.52□□□□□ -2.01
VCANP13611 DNAJC10-209ENST00000613960 1010 ntTSL 5 BASIC2.52□□□□□ -2.01
VCANP13611 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC2.52□□□□□ -2.01
VCANP13611 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
VCANP13611 AL031985.3-201ENST00000565390 2449 ntBASIC2.51□□□□□ -2.01
VCANP13611 AL121834.1-202ENST00000404494 277 ntBASIC2.51□□□□□ -2.01
VCANP13611 RPS15AP12-201ENST00000419498 388 ntBASIC2.51□□□□□ -2.01
VCANP13611 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC2.51□□□□□ -2.01
VCANP13611 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC2.51□□□□□ -2.01
VCANP13611 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC2.51□□□□□ -2.01
VCANP13611 ZNF861P-201ENST00000588126 639 ntBASIC2.51□□□□□ -2.01
VCANP13611 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
VCANP13611 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC2.51□□□□□ -2.01
VCANP13611 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC2.51□□□□□ -2.01
VCANP13611 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC2.51□□□□□ -2.01
VCANP13611 RNU6-707P-201ENST00000364647 95 ntBASIC2.51□□□□□ -2.01
VCANP13611 AL023807.1-201ENST00000407932 359 ntBASIC2.51□□□□□ -2.01
VCANP13611 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
VCANP13611 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC2.51□□□□□ -2.01
VCANP13611 HMGB1P25-201ENST00000468402 607 ntBASIC2.51□□□□□ -2.01
VCANP13611 AC003982.1-202ENST00000469928 248 ntBASIC2.51□□□□□ -2.01
VCANP13611 AC109315.1-201ENST00000584143 1347 ntBASIC2.51□□□□□ -2.01
VCANP13611 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC2.5□□□□□ -2.01
VCANP13611 RPL32P35-201ENST00000415214 394 ntBASIC2.5□□□□□ -2.01
VCANP13611 RFESD-208ENST00000513950 464 ntTSL 5 BASIC2.5□□□□□ -2.01
VCANP13611 RGS4-209ENST00000531057 544 ntTSL 4 BASIC2.5□□□□□ -2.01
VCANP13611 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC2.5□□□□□ -2.01
VCANP13611 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC2.5□□□□□ -2.01
VCANP13611 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC2.5□□□□□ -2.01
VCANP13611 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC2.5□□□□□ -2.01
VCANP13611 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC2.5□□□□□ -2.01
VCANP13611 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.5□□□□□ -2.01
VCANP13611 MIR148B-201ENST00000362252 99 ntBASIC2.5□□□□□ -2.01
VCANP13611 AC069218.2-201ENST00000411665 344 ntBASIC2.5□□□□□ -2.01
VCANP13611 RPS12P23-201ENST00000419579 400 ntBASIC2.5□□□□□ -2.01
VCANP13611 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC2.5□□□□□ -2.01
VCANP13611 CR381653.2-201ENST00000624041 768 ntBASIC2.5□□□□□ -2.01
VCANP13611 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
VCANP13611 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC2.5□□□□□ -2.01
VCANP13611 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC2.5□□□□□ -2.01
VCANP13611 RPL23AP58-201ENST00000440453 469 ntBASIC2.5□□□□□ -2.01
VCANP13611 RN7SL75P-201ENST00000461926 281 ntBASIC2.5□□□□□ -2.01
VCANP13611 AC092991.1-201ENST00000477176 376 ntBASIC2.5□□□□□ -2.01
VCANP13611 THAP6-203ENST00000502620 582 ntTSL 3 BASIC2.5□□□□□ -2.01
VCANP13611 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC2.5□□□□□ -2.01
VCANP13611 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC2.5□□□□□ -2.01
VCANP13611 AC010338.1-201ENST00000621823 717 ntBASIC2.5□□□□□ -2.01
VCANP13611 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC2.5□□□□□ -2.01
VCANP13611 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
VCANP13611 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
VCANP13611 AC093831.2-201ENST00000624393 3427 ntBASIC2.49□□□□□ -2.01
VCANP13611 AC093536.2-201ENST00000565257 1406 ntBASIC2.49□□□□□ -2.01
VCANP13611 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.49□□□□□ -2.01
VCANP13611 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
VCANP13611 FAM35BP-202ENST00000497389 3337 ntBASIC2.49□□□□□ -2.01
VCANP13611 AL121594.1-201ENST00000475906 575 ntBASIC2.49□□□□□ -2.01
VCANP13611 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC2.49□□□□□ -2.01
VCANP13611 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC2.49□□□□□ -2.01
VCANP13611 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC2.49□□□□□ -2.01
VCANP13611 RPS15AP17-201ENST00000470598 390 ntBASIC2.49□□□□□ -2.01
VCANP13611 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC2.49□□□□□ -2.01
VCANP13611 AC087565.3-202ENST00000642085 1603 ntBASIC2.48□□□□□ -2.01
VCANP13611 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.48□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms