Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AL355493.4-201ENST00000618530 292 ntBASIC2.57□□□□□ -2
COL6A3P12111 AC002064.3-201ENST00000623448 346 ntBASIC2.57□□□□□ -2
COL6A3P12111 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
COL6A3P12111 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC2.57□□□□□ -2
COL6A3P12111 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC2.56□□□□□ -2
COL6A3P12111 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
COL6A3P12111 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
COL6A3P12111 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.56□□□□□ -2
COL6A3P12111 MIR423-201ENST00000362201 94 ntBASIC2.56□□□□□ -2
COL6A3P12111 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC2.56□□□□□ -2
COL6A3P12111 MIR137-201ENST00000385223 102 ntBASIC2.56□□□□□ -2
COL6A3P12111 AC069218.2-201ENST00000411665 344 ntBASIC2.56□□□□□ -2
COL6A3P12111 NDUFB4P6-201ENST00000436819 366 ntBASIC2.56□□□□□ -2
COL6A3P12111 AC072039.1-201ENST00000477611 581 ntBASIC2.56□□□□□ -2
COL6A3P12111 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC2.56□□□□□ -2
COL6A3P12111 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC2.56□□□□□ -2
COL6A3P12111 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.56□□□□□ -2
COL6A3P12111 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC2.56□□□□□ -2
COL6A3P12111 ZNF861P-201ENST00000588126 639 ntBASIC2.56□□□□□ -2
COL6A3P12111 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC2.56□□□□□ -2
COL6A3P12111 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC2.56□□□□□ -2
COL6A3P12111 AL353684.1-201ENST00000622677 1120 ntBASIC2.56□□□□□ -2
COL6A3P12111 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC2.56□□□□□ -2
COL6A3P12111 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC2.56□□□□□ -2
COL6A3P12111 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.56□□□□□ -2
COL6A3P12111 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.56□□□□□ -2
COL6A3P12111 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC2.56□□□□□ -2
COL6A3P12111 CUBN-201ENST00000377823 705 ntTSL 3 BASIC2.56□□□□□ -2
COL6A3P12111 RPS15AP12-201ENST00000419498 388 ntBASIC2.56□□□□□ -2
COL6A3P12111 OR6C64P-201ENST00000419708 825 ntBASIC2.56□□□□□ -2
COL6A3P12111 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC2.56□□□□□ -2
COL6A3P12111 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC2.56□□□□□ -2
COL6A3P12111 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC2.56□□□□□ -2
COL6A3P12111 AL121594.1-201ENST00000475906 575 ntBASIC2.56□□□□□ -2
COL6A3P12111 AC015911.5-201ENST00000587076 451 ntBASIC2.56□□□□□ -2
COL6A3P12111 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC2.56□□□□□ -2
COL6A3P12111 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC2.56□□□□□ -2
COL6A3P12111 AC109315.1-201ENST00000584143 1347 ntBASIC2.55□□□□□ -2
COL6A3P12111 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC2.55□□□□□ -2
COL6A3P12111 RNA5SP281-201ENST00000516504 135 ntBASIC2.55□□□□□ -2
COL6A3P12111 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC2.55□□□□□ -2
COL6A3P12111 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
COL6A3P12111 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.55□□□□□ -2
COL6A3P12111 RPS7P13-201ENST00000413955 498 ntBASIC2.55□□□□□ -2
COL6A3P12111 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC2.55□□□□□ -2
COL6A3P12111 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC2.55□□□□□ -2
COL6A3P12111 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC2.55□□□□□ -2
COL6A3P12111 AC135279.1-201ENST00000543493 504 ntBASIC2.55□□□□□ -2
COL6A3P12111 AC141257.3-201ENST00000572906 215 ntBASIC2.55□□□□□ -2
COL6A3P12111 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC2.55□□□□□ -2
COL6A3P12111 Z98941.1-201ENST00000407764 100 ntBASIC2.55□□□□□ -2
COL6A3P12111 RNU2-2P-201ENST00000410396 191 ntBASIC2.55□□□□□ -2
COL6A3P12111 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC2.55□□□□□ -2
COL6A3P12111 HPRT1P3-201ENST00000539521 576 ntBASIC2.55□□□□□ -2
COL6A3P12111 C1GALT1P1-201ENST00000548895 1089 ntBASIC2.55□□□□□ -2
COL6A3P12111 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC2.55□□□□□ -2
COL6A3P12111 U2.15-201ENST00000611544 191 ntBASIC2.55□□□□□ -2
COL6A3P12111 U2.16-201ENST00000613119 191 ntBASIC2.55□□□□□ -2
COL6A3P12111 U2.12-201ENST00000613778 191 ntBASIC2.55□□□□□ -2
COL6A3P12111 U2.20-201ENST00000613956 192 ntBASIC2.55□□□□□ -2
COL6A3P12111 U2.9-201ENST00000615427 191 ntBASIC2.55□□□□□ -2
COL6A3P12111 U2.11-201ENST00000616345 191 ntBASIC2.55□□□□□ -2
COL6A3P12111 U2.2-201ENST00000616535 191 ntBASIC2.55□□□□□ -2
COL6A3P12111 U2.3-201ENST00000617785 191 ntBASIC2.55□□□□□ -2
COL6A3P12111 U2.19-201ENST00000618602 191 ntBASIC2.55□□□□□ -2
COL6A3P12111 RNU2-1-201ENST00000618664 191 ntBASIC2.55□□□□□ -2
COL6A3P12111 U2.6-201ENST00000619225 191 ntBASIC2.55□□□□□ -2
COL6A3P12111 U2.5-201ENST00000619465 191 ntBASIC2.55□□□□□ -2
COL6A3P12111 U2.10-201ENST00000620268 191 ntBASIC2.55□□□□□ -2
COL6A3P12111 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
COL6A3P12111 Z99496.1-201ENST00000469424 1477 ntBASIC2.54□□□□□ -2
COL6A3P12111 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC2.54□□□□□ -2
COL6A3P12111 RNA5SP31-201ENST00000411144 127 ntBASIC2.54□□□□□ -2
COL6A3P12111 RPS6P4-201ENST00000494693 758 ntBASIC2.54□□□□□ -2
COL6A3P12111 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC2.54□□□□□ -2
COL6A3P12111 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC2.54□□□□□ -2
COL6A3P12111 AL391813.2-201ENST00000609113 322 ntBASIC2.54□□□□□ -2
COL6A3P12111 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC2.54□□□□□ -2
COL6A3P12111 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC2.54□□□□□ -2
COL6A3P12111 AC087565.3-202ENST00000642085 1603 ntBASIC2.54□□□□□ -2
COL6A3P12111 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC2.54□□□□□ -2
COL6A3P12111 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC2.54□□□□□ -2
COL6A3P12111 AC002543.1-201ENST00000299783 1954 ntBASIC2.54□□□□□ -2
COL6A3P12111 RNU4-44P-201ENST00000363050 141 ntBASIC2.54□□□□□ -2
COL6A3P12111 RNU2-68P-201ENST00000410878 191 ntBASIC2.54□□□□□ -2
COL6A3P12111 RPS29P6-201ENST00000438196 145 ntBASIC2.54□□□□□ -2
COL6A3P12111 AC018682.2-201ENST00000517716 399 ntTSL 5 BASIC2.54□□□□□ -2
COL6A3P12111 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC2.54□□□□□ -2
COL6A3P12111 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC2.54□□□□□ -2
COL6A3P12111 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
COL6A3P12111 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC2.54□□□□□ -2
COL6A3P12111 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.54□□□□□ -2
COL6A3P12111 AC107081.3-201ENST00000612715 2034 ntBASIC2.54□□□□□ -2
COL6A3P12111 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC2.53□□□□□ -2
COL6A3P12111 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
COL6A3P12111 RPL30P2-201ENST00000414021 291 ntBASIC2.53□□□□□ -2
COL6A3P12111 RPL23AP58-201ENST00000440453 469 ntBASIC2.53□□□□□ -2
COL6A3P12111 ST13P14-201ENST00000474095 734 ntBASIC2.53□□□□□ -2
COL6A3P12111 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC2.53□□□□□ -2
COL6A3P12111 AC090833.1-202ENST00000511073 781 ntTSL 3 BASIC2.53□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 106.7 ms