Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC009646.1-201ENST00000510455 318 ntBASIC5.24□□□□□ -1.57
COL6A1P12109 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC5.24□□□□□ -1.57
COL6A1P12109 AC025465.4-201ENST00000513422 638 ntBASIC5.24□□□□□ -1.57
COL6A1P12109 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
COL6A1P12109 SNORA31.9-201ENST00000516429 84 ntBASIC5.24□□□□□ -1.57
COL6A1P12109 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC5.24□□□□□ -1.57
COL6A1P12109 DYNLL1P4-201ENST00000549314 266 ntBASIC5.24□□□□□ -1.57
COL6A1P12109 AC040958.1-201ENST00000561102 201 ntBASIC5.24□□□□□ -1.57
COL6A1P12109 HMGB1P33-201ENST00000563485 527 ntBASIC5.24□□□□□ -1.57
COL6A1P12109 AL391840.1-201ENST00000571144 367 ntBASIC5.24□□□□□ -1.57
COL6A1P12109 AC141257.3-201ENST00000572906 215 ntBASIC5.24□□□□□ -1.57
COL6A1P12109 AC008752.3-201ENST00000588113 712 ntBASIC5.24□□□□□ -1.57
COL6A1P12109 AC007038.2-201ENST00000608095 740 ntBASIC5.24□□□□□ -1.57
COL6A1P12109 AC103710.4-201ENST00000609301 899 ntBASIC5.24□□□□□ -1.57
COL6A1P12109 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC5.24□□□□□ -1.57
COL6A1P12109 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC5.24□□□□□ -1.57
COL6A1P12109 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC5.24□□□□□ -1.57
COL6A1P12109 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
COL6A1P12109 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC5.24□□□□□ -1.57
COL6A1P12109 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
COL6A1P12109 AC117529.2-201ENST00000512159 2068 ntBASIC5.24□□□□□ -1.57
COL6A1P12109 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
COL6A1P12109 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
COL6A1P12109 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
COL6A1P12109 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
COL6A1P12109 MIR506-201ENST00000384998 124 ntBASIC5.23□□□□□ -1.57
COL6A1P12109 RNA5SP317-201ENST00000410176 116 ntBASIC5.23□□□□□ -1.57
COL6A1P12109 RNA5SP311-201ENST00000411290 116 ntBASIC5.23□□□□□ -1.57
COL6A1P12109 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC5.23□□□□□ -1.57
COL6A1P12109 FCF1P2-201ENST00000415284 583 ntBASIC5.23□□□□□ -1.57
COL6A1P12109 AC092634.6-201ENST00000418558 192 ntBASIC5.23□□□□□ -1.57
COL6A1P12109 RPS15AP40-201ENST00000419621 391 ntBASIC5.23□□□□□ -1.57
COL6A1P12109 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC5.23□□□□□ -1.57
COL6A1P12109 AC069157.1-201ENST00000421749 137 ntBASIC5.23□□□□□ -1.57
COL6A1P12109 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
COL6A1P12109 SKP1P1-201ENST00000438081 489 ntBASIC5.23□□□□□ -1.57
COL6A1P12109 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC5.23□□□□□ -1.57
COL6A1P12109 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC5.23□□□□□ -1.57
COL6A1P12109 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC5.23□□□□□ -1.57
COL6A1P12109 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC5.23□□□□□ -1.57
COL6A1P12109 AC012170.1-201ENST00000495139 359 ntBASIC5.23□□□□□ -1.57
COL6A1P12109 MTCYBP18-201ENST00000501056 747 ntBASIC5.23□□□□□ -1.57
COL6A1P12109 MTCYBP17-201ENST00000503579 789 ntBASIC5.23□□□□□ -1.57
COL6A1P12109 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC5.23□□□□□ -1.57
COL6A1P12109 RNA5SP315-201ENST00000516340 116 ntBASIC5.23□□□□□ -1.57
COL6A1P12109 RNA5SP312-201ENST00000517068 116 ntBASIC5.23□□□□□ -1.57
COL6A1P12109 HIGD1AP6-201ENST00000521833 279 ntBASIC5.23□□□□□ -1.57
COL6A1P12109 AP003730.1-201ENST00000524605 285 ntBASIC5.23□□□□□ -1.57
COL6A1P12109 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC5.23□□□□□ -1.57
COL6A1P12109 AP000827.1-201ENST00000527814 258 ntBASIC5.23□□□□□ -1.57
COL6A1P12109 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC5.23□□□□□ -1.57
COL6A1P12109 AL157687.1-201ENST00000554853 619 ntBASIC5.23□□□□□ -1.57
COL6A1P12109 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC5.23□□□□□ -1.57
COL6A1P12109 CENPUP2-201ENST00000555897 1186 ntBASIC5.23□□□□□ -1.57
COL6A1P12109 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC5.23□□□□□ -1.57
COL6A1P12109 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC5.23□□□□□ -1.57
COL6A1P12109 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC5.23□□□□□ -1.57
COL6A1P12109 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC5.23□□□□□ -1.57
COL6A1P12109 SNORA74C-1-201ENST00000580726 201 ntBASIC5.23□□□□□ -1.57
COL6A1P12109 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC5.23□□□□□ -1.57
COL6A1P12109 BNIP3P23-201ENST00000599655 511 ntBASIC5.23□□□□□ -1.57
COL6A1P12109 LLPHP1-201ENST00000603571 367 ntBASIC5.23□□□□□ -1.57
COL6A1P12109 AC025449.1-201ENST00000603896 529 ntBASIC5.23□□□□□ -1.57
COL6A1P12109 AC010680.4-201ENST00000605334 543 ntBASIC5.23□□□□□ -1.57
COL6A1P12109 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC5.23□□□□□ -1.57
COL6A1P12109 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC5.23□□□□□ -1.57
COL6A1P12109 AC006133.1-201ENST00000617106 264 ntBASIC5.23□□□□□ -1.57
COL6A1P12109 AL359697.1-201ENST00000624879 587 ntBASIC5.23□□□□□ -1.57
COL6A1P12109 MIR492-201ENST00000638676 116 ntBASIC5.23□□□□□ -1.57
COL6A1P12109 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
COL6A1P12109 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
COL6A1P12109 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC5.23□□□□□ -1.57
COL6A1P12109 AC000123.3-201ENST00000624029 4975 ntBASIC5.23□□□□□ -1.57
COL6A1P12109 LCMT1-AS2-202ENST00000565214 5666 ntBASIC5.23□□□□□ -1.57
COL6A1P12109 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
COL6A1P12109 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
COL6A1P12109 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
COL6A1P12109 AC112198.2-201ENST00000426589 6996 ntBASIC5.22□□□□□ -1.57
COL6A1P12109 EIF2AP4-201ENST00000424793 1781 ntBASIC5.22□□□□□ -1.57
COL6A1P12109 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
COL6A1P12109 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC5.22□□□□□ -1.57
COL6A1P12109 RNU6-115P-201ENST00000364310 107 ntBASIC5.22□□□□□ -1.57
COL6A1P12109 Y_RNA.295-201ENST00000364918 102 ntBASIC5.22□□□□□ -1.57
COL6A1P12109 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
COL6A1P12109 CALM2P3-201ENST00000400429 449 ntBASIC5.22□□□□□ -1.57
COL6A1P12109 RNU4-55P-201ENST00000410731 137 ntBASIC5.22□□□□□ -1.57
COL6A1P12109 RPL31P45-201ENST00000419532 356 ntBASIC5.22□□□□□ -1.57
COL6A1P12109 RPS12P23-201ENST00000419579 400 ntBASIC5.22□□□□□ -1.57
COL6A1P12109 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC5.22□□□□□ -1.57
COL6A1P12109 PSMA2P3-201ENST00000429685 675 ntBASIC5.22□□□□□ -1.57
COL6A1P12109 H2AFZP5-201ENST00000446960 382 ntBASIC5.22□□□□□ -1.57
COL6A1P12109 AL118496.2-201ENST00000448300 230 ntBASIC5.22□□□□□ -1.57
COL6A1P12109 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
COL6A1P12109 PRPF38AP1-201ENST00000451976 933 ntBASIC5.22□□□□□ -1.57
COL6A1P12109 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC5.22□□□□□ -1.57
COL6A1P12109 NDUFA5P7-201ENST00000452914 242 ntBASIC5.22□□□□□ -1.57
COL6A1P12109 AC079168.2-201ENST00000453977 416 ntBASIC5.22□□□□□ -1.57
COL6A1P12109 RPL21P126-201ENST00000470049 478 ntBASIC5.22□□□□□ -1.57
COL6A1P12109 AL049874.2-201ENST00000492636 288 ntBASIC5.22□□□□□ -1.57
COL6A1P12109 AC073073.1-201ENST00000493920 463 ntBASIC5.22□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 80.4 ms